Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of monoclonal S9.6 Fab bound to DNA-RNA hybrid
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7tqb_A_C1_U2 | AAA | AA04 | 80 | 0.28 |
| 02 | 7tqb_A_U2_U3 | AAA | AA00 | 91 | 0.14 |
| 03 | 7tqb_A_U3_G4 | AAA | AA00 | 94 | 0.10 |
| 04 | 7tqb_A_G4_U5 | AAw | AA10 | 39 | 0.33 |
| 05 | 7tqb_A_U5_C6 | AAA | AA00 | 76 | 0.20 |
| 06 | 7tqb_A_C6_U7 | AAA | AA00 | 79 | 0.28 |
| 07 | 7tqb_A_U7_G8 | AAA | AA00 | 73 | 0.24 |
| 08 | 7tqb_A_G8_A9 | AAA | AA00 | 88 | 0.14 |
| 09 | 7tqb_A_A9_C10 | AAA | AA08 | 90 | 0.15 |
| 10 | 7tqb_A_C10_A11 | AAA | AA00 | 82 | 0.17 |
| 11 | 7tqb_A_A11_C12 | AAA | AA00 | 66 | 0.31 |
| 12 | 7tqb_A_C12_G13 | AAA | AA00 | 85 | 0.15 |
| 13 | 7tqb_B_DC1_DG2 | AAA | AA00 | 61 | 0.42 |
| 14 | 7tqb_B_DG2_DT3 | AAA | AA00 | 76 | 0.21 |
| 15 | 7tqb_B_DT3_DG4 | AAA | AA00 | 90 | 0.15 |
| 16 | 7tqb_B_DG4_DT5 | AAA | AA00 | 96 | 0.13 |
| 17 | 7tqb_B_DT5_DC6 | AAA | AA00 | 64 | 0.29 |
| 18 | 7tqb_B_DC6_DA7 | AAA | AA08 | 52 | 0.38 |
| 19 | 7tqb_B_DA7_DG8 | A-B | AB05 | 91 | 0.18 |
| 20 | 7tqb_B_DG8_DA9 | NAN | NANT | 0 | 0.61 |
| 21 | 7tqb_B_DA9_DC10 | AAA | AA00 | 84 | 0.21 |
| 22 | 7tqb_B_DC10_DA11 | NAN | NANT | 0 | 0.57 |
| 23 | 7tqb_B_DA11_DA12 | BBB | BB01 | 79 | 0.20 |
| 24 | 7tqb_B_DA12_DG13 | BBB | BB00 | 61 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|