DNATCO v4.1: results

Crystal structure of an RNA-5'/DNA-3' strand exchange junction

Results of the assignment of 69 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7thb_A_DG1_DT2	AAA	AA00	54	0.25	AA00
02	7thb_A_DT2_DA3	NAN	NANT	0	0.40	AB04
03	7thb_A_DA3_DA4	A-B	AB03	17	0.28	AB03
04	7thb_A_DA4_DG5	B-A	BA08	41	0.28	BA08
05	7thb_A_DG5_DC6	AAA	AA00	60	0.34	AA00
06	7thb_A_DC6_DA7	A-B	AB01	39	0.24	AB01
07	7thb_A_DA7_DG8	BBB	BB00	81	0.17	BB00
08	7thb_A_DG8_DC9	B12	BB04	65	0.29	BB04
09	7thb_A_DC9_DA10	BBB	BB00	73	0.31	BB00
10	7thb_A_DA10_DT11	BBB	BB01	70	0.25	BB01
11	7thb_A_DT11_DC12	B-A	BA05	55	0.29	BA05
12	7thb_B_A1_G2	OPN	OP11	76	0.24	OP11
13	7thb_B_G2_C3	AAA	AA00	86	0.15	AA00
14	7thb_B_C3_U4	AAA	AA00	94	0.14	AA00
15	7thb_B_U4_U5	AAA	AA08	82	0.20	AA08
16	7thb_B_U5_A6	AAA	AA00	64	0.19	AA00
17	7thb_B_A6_C7	AAA	AA08	94	0.20	AA08
18	7thb_C_DG1_DA2	BBB	BB00	27	0.18	BB00
19	7thb_C_DA2_DT3	BBB	BB00	53	0.23	BB00
20	7thb_C_DT3_DG4	miB	BB10	21	0.37	BB10
21	7thb_C_DG4_DC5	BBB	BB00	36	0.22	BB00
22	7thb_C_DC5_DT6	BBB	BB00	76	0.16	BB00
23	7thb_C_DT6_DC7	NAN	NANT	0	0.62	OP21
24	7thb_D_DG1_DT2	A-B	AB04	24	0.40	AB04
25	7thb_D_DT2_DA3	BBw	BB16	53	0.53	BB16
26	7thb_D_DA3_DA4	BBB	BB00	45	0.25	BB00
27	7thb_D_DA4_DG5	B-A	BA08	52	0.35	BA08
28	7thb_D_DG5_DC6	AAA	AA00	78	0.23	AA00
29	7thb_D_DC6_DA7	A-B	AB05	87	0.23	AB05
30	7thb_D_DA7_DG8	BBB	BB00	83	0.14	BB00
31	7thb_D_DG8_DC9	BBB	BB00	85	0.26	BB00
32	7thb_D_DC9_DA10	BB2	BB07	91	0.21	BB07
33	7thb_D_DA10_DT11	BBB	BB00	45	0.23	BB00
34	7thb_D_DT11_DC12	B-A	BA01	20	0.22	BA01
35	7thb_E_A1_G2	OPN	OP11	76	0.27	OP11
36	7thb_E_G2_C3	AAA	AA00	87	0.14	AA00
37	7thb_E_C3_U4	AAA	AA00	78	0.26	AA00
38	7thb_E_U4_U5	AAA	AA00	82	0.17	AA00
39	7thb_E_U5_A6	AAA	AA00	87	0.13	AA00
40	7thb_E_A6_C7	AAA	AA08	89	0.14	AA08
41	7thb_F_DG1_DA2	BBB	BB00	16	0.27	BB00
42	7thb_F_DA2_DT3	BBB	BB00	75	0.17	BB00
43	7thb_F_DT3_DG4	BBB	BB00	80	0.22	BB00
44	7thb_F_DG4_DC5	BB2	BB07	61	0.25	BB07
45	7thb_F_DC5_DT6	BBB	BB00	87	0.23	BB00
46	7thb_F_DT6_DC7	NAN	NANT	0	0.71	OP21
47	7thb_G_DG1_DT2	A-B	AB04	24	0.45	AB04
48	7thb_G_DT2_DA3	A-B	AB03	64	0.38	AB03
49	7thb_G_DA3_DA4	A-B	AB03	14	0.36	AB03
50	7thb_G_DA4_DG5	B-A	BA08	51	0.30	BA08
51	7thb_G_DG5_DC6	B-A	BA05	51	0.21	BA05
52	7thb_G_DC6_DA7	A-B	AB03	78	0.32	AB03
53	7thb_G_DA7_DG8	B12	BB04	71	0.31	BB04
54	7thb_G_DG8_DC9	B12	BB04	35	0.43	BB04
55	7thb_G_DC9_DA10	B12	BB04	63	0.16	BB04
56	7thb_G_DA10_DT11	BBB	BB00	49	0.23	BB00
57	7thb_G_DT11_DC12	NAN	NANT	0	0.39	AB03
58	7thb_H_A1_G2	NAN	NANT	0	0.35	OP11
59	7thb_H_G2_C3	AAA	AA00	86	0.15	AA00
60	7thb_H_C3_U4	AAA	AA08	91	0.14	AA08
61	7thb_H_U4_U5	AAA	AA00	78	0.17	AA00
62	7thb_H_U5_A6	AAA	AA00	88	0.14	AA00
63	7thb_H_A6_C7	AAA	AA08	82	0.20	AA08
64	7thb_I_DG1_DA2	BBB	BB00	64	0.17	BB00
65	7thb_I_DA2_DT3	BBB	BB00	34	0.23	BB00
66	7thb_I_DT3_DG4	miB	BB10	40	0.28	BB10
67	7thb_I_DG4_DC5	B12	BB04	63	0.21	BB04
68	7thb_I_DC5_DT6	BBB	BB00	91	0.16	BB00
69	7thb_I_DT6_DC7	NAN	NANT	0	0.71	OP20

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A

A-B

B-A

IC

OPN

Z

N

Results of the assignment of 69 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible