Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
BrxR from Acinetobacter BREX type I phage restriction system bound to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7t8k_C_DA1_DT2 | B-A | BA05 | 67 | 0.21 |
| 02 | 7t8k_C_DT2_DA3 | BBB | BB00 | 11 | 0.35 |
| 03 | 7t8k_C_DA3_DC4 | B-A | BA16 | 49 | 0.26 |
| 04 | 7t8k_C_DC4_DA5 | AAA | AA00 | 78 | 0.23 |
| 05 | 7t8k_C_DA5_DG6 | A-B | AB04 | 70 | 0.40 |
| 06 | 7t8k_C_DG6_DT7 | NAN | NANT | 0 | 0.52 |
| 07 | 7t8k_C_DT7_DA8 | BB2 | BB07 | 13 | 0.20 |
| 08 | 7t8k_C_DA8_DA9 | BBB | BB00 | 80 | 0.22 |
| 09 | 7t8k_C_DA9_DA10 | BBB | BB00 | 90 | 0.12 |
| 10 | 7t8k_C_DA10_DT11 | BBB | BB00 | 76 | 0.23 |
| 11 | 7t8k_C_DT11_DT12 | BBB | BB01 | 90 | 0.20 |
| 12 | 7t8k_C_DT12_DA13 | BBB | BB00 | 75 | 0.19 |
| 13 | 7t8k_C_DA13_DT14 | BBB | BB00 | 52 | 0.25 |
| 14 | 7t8k_C_DT14_DT15 | BBw | BB02 | 63 | 0.20 |
| 15 | 7t8k_C_DT15_DT16 | BBB | BB00 | 61 | 0.20 |
| 16 | 7t8k_C_DT16_DT17 | BBB | BB00 | 95 | 0.13 |
| 17 | 7t8k_C_DT17_DT18 | BBB | BB01 | 68 | 0.21 |
| 18 | 7t8k_C_DT18_DA19 | BBB | BB01 | 76 | 0.21 |
| 19 | 7t8k_C_DA19_DC20 | BBB | BB00 | 65 | 0.31 |
| 20 | 7t8k_C_DC20_DG21 | B-A | BA09 | 37 | 0.28 |
| 21 | 7t8k_C_DG21_DG22 | A-B | AB04 | 30 | 0.33 |
| 22 | 7t8k_C_DG22_DT23 | BBB | BB00 | 53 | 0.30 |
| 23 | 7t8k_C_DT23_DA24 | BBw | BB02 | 18 | 0.43 |
| 24 | 7t8k_C_DA24_DT25 | NAN | NANT | 0 | 0.83 |
| 25 | 7t8k_D_DA1_DT2 | NAN | NANT | 0 | 1.09 |
| 26 | 7t8k_D_DT2_DA3 | BBB | BB00 | 12 | 0.44 |
| 27 | 7t8k_D_DA3_DC4 | NAN | NANT | 0 | 0.49 |
| 28 | 7t8k_D_DC4_DC5 | AAA | AA00 | 66 | 0.28 |
| 29 | 7t8k_D_DC5_DG6 | A-B | AB05 | 64 | 0.41 |
| 30 | 7t8k_D_DG6_DT7 | miB | BB15 | 45 | 0.48 |
| 31 | 7t8k_D_DT7_DA8 | BB2 | BB07 | 84 | 0.29 |
| 32 | 7t8k_D_DA8_DA9 | BBB | BB00 | 76 | 0.22 |
| 33 | 7t8k_D_DA9_DA10 | B12 | BB04 | 68 | 0.22 |
| 34 | 7t8k_D_DA10_DA11 | BBB | BB01 | 75 | 0.17 |
| 35 | 7t8k_D_DA11_DA12 | BBB | BB00 | 78 | 0.19 |
| 36 | 7t8k_D_DA12_DT13 | BBB | BB01 | 74 | 0.15 |
| 37 | 7t8k_D_DT13_DA14 | BBB | BB00 | 64 | 0.26 |
| 38 | 7t8k_D_DA14_DA15 | BBB | BB01 | 62 | 0.12 |
| 39 | 7t8k_D_DA15_DT16 | BBB | BB00 | 20 | 0.34 |
| 40 | 7t8k_D_DT16_DT17 | BBB | BB00 | 92 | 0.15 |
| 41 | 7t8k_D_DT17_DT18 | BBB | BB01 | 90 | 0.15 |
| 42 | 7t8k_D_DT18_DA19 | BBB | BB00 | 34 | 0.22 |
| 43 | 7t8k_D_DA19_DC20 | B-A | BA13 | 81 | 0.21 |
| 44 | 7t8k_D_DC20_DT21 | AAw | AA06 | 13 | 0.47 |
| 45 | 7t8k_D_DT21_DG22 | A-B | AB05 | 56 | 0.33 |
| 46 | 7t8k_D_DG22_DT23 | BBB | BB00 | 59 | 0.35 |
| 47 | 7t8k_D_DT23_DA24 | B12 | BB04 | 74 | 0.30 |
| 48 | 7t8k_D_DA24_DT25 | BBB | BB00 | 91 | 0.12 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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