Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Rev1 Ternary Complex with rCTP and Ca2+
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7t1b_P_DG1_DG2 | AAA | AA00 | 65 | 0.20 |
| 02 | 7t1b_P_DG2_DG3 | AAA | AA00 | 61 | 0.25 |
| 03 | 7t1b_P_DG3_DG4 | AAA | AA00 | 73 | 0.30 |
| 04 | 7t1b_P_DG4_DT5 | AAA | AA00 | 54 | 0.23 |
| 05 | 7t1b_P_DT5_DG6 | A-B | AB01 | 69 | 0.18 |
| 06 | 7t1b_P_DG6_DT7 | BBB | BB01 | 89 | 0.12 |
| 07 | 7t1b_P_DT7_DG8 | BBB | BB00 | 50 | 0.19 |
| 08 | 7t1b_P_DG8_DG9 | BBB | BB00 | 47 | 0.18 |
| 09 | 7t1b_P_DG9_DT10 | BBB | BB01 | 70 | 0.19 |
| 10 | 7t1b_P_DT10_DA11 | BBB | BB00 | 67 | 0.23 |
| 11 | 7t1b_P_DA11_DG12 | NAN | NANT | 0 | 0.74 |
| 12 | 7t1b_T_DA2_DT3 | NAN | NANT | 0 | 0.75 |
| 13 | 7t1b_T_DT3_DC4 | NAN | NANT | 0 | 0.93 |
| 14 | 7t1b_T_DC4_DG5 | NAN | NANT | 0 | 1.37 |
| 15 | 7t1b_T_DG5_DC6 | NAN | NANT | 0 | 0.39 |
| 16 | 7t1b_T_DC6_DT7 | BBB | BB00 | 15 | 0.44 |
| 17 | 7t1b_T_DT7_DA8 | B12 | BB04 | 18 | 0.20 |
| 18 | 7t1b_T_DA8_DC9 | BBB | BB00 | 78 | 0.25 |
| 19 | 7t1b_T_DC9_DC10 | B12 | BB04 | 50 | 0.21 |
| 20 | 7t1b_T_DC10_DA11 | BBB | BB01 | 62 | 0.19 |
| 21 | 7t1b_T_DA11_DC12 | B-A | BA05 | 57 | 0.27 |
| 22 | 7t1b_T_DC12_DA13 | A-B | AB03 | 82 | 0.31 |
| 23 | 7t1b_T_DA13_DC14 | BBB | BB00 | 69 | 0.18 |
| 24 | 7t1b_T_DC14_DC15 | B-A | BA10 | 45 | 0.35 |
| 25 | 7t1b_T_DC15_DC16 | AAA | AA00 | 71 | 0.23 |
| 26 | 7t1b_T_DC16_DC17 | AAA | AA00 | 69 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|