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Conformers: ABBIImiBZICOPNSYNN
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Rev1 Ternary Complex with dATP and Ca2+

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017t1a_P_DG1_DG2AAAAA00550.32 AA00
027t1a_P_DG2_DG3AAAAA02110.44 AA02
037t1a_P_DG3_DG4B-ABA05190.33 BA05
047t1a_P_DG4_DT5AAAAA00820.27 AA00
057t1a_P_DT5_DG6A-BAB01850.20 AB01
067t1a_P_DG6_DT7BBBBB01910.12 BB01
077t1a_P_DT7_DG8BBBBB00430.20 BB00
087t1a_P_DG8_DG9BBBBB01130.18 BB01
097t1a_P_DG9_DT10BBBBB01640.20 BB01
107t1a_P_DT10_DA11BBBBB00740.27 BB00
117t1a_P_DA11_DG12BB2BB08500.48 BB08
127t1a_T_DA2_DT3NANNANT00.84 AAS1
137t1a_T_DT3_DC4NANNANT00.86 AAS1
147t1a_T_DC4_DG5NANNANT01.38 OP31
157t1a_T_DG5_DC6NANNANT00.40 OP28
167t1a_T_DC6_DT7BBBBB00450.43 BB00
177t1a_T_DT7_DA8B12BB04360.29 BB04
187t1a_T_DA8_DC9BBBBB00840.21 BB00
197t1a_T_DC9_DC10miBBB10580.38 BB10
207t1a_T_DC10_DA11BBBBB01790.14 BB01
217t1a_T_DA11_DC12BBBBB01570.19 BB01
227t1a_T_DC12_DA13B12BB04260.31 BB04
237t1a_T_DA13_DC14BBBBB01220.34 BB01
247t1a_T_DC14_DC15B-ABA05410.33 BA05
257t1a_T_DC15_DC16AAAAA03330.41 AA03
267t1a_T_DC16_DC17NANNANT00.36 AB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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