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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of intact U2AF65 RRM-region bound to AdML-G5 oligonucleotide

Results of the assignment of 7 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
17s3b_B_U2_U3NANNANT01.15 OP22
27s3b_B_U3_DU4NANNANT00.46 OP15
37s3b_B_DU4_G5A-BAB05170.53 AB05
47s3b_B_G5_U6NANNANT00.95 OP06
57s3b_B_U6_BRU7NANNANT00.58 OP20
67s3b_B_BRU7_C8NANNANT00.60 OP15
77s3b_B_C8_C9AAAAA00660.29 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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