Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Updated Crystal Structure of Replication Initiator Protein REPE54.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7rva_A_DC1_DC2 | AAA | AA00 | 77 | 0.27 |
| 02 | 7rva_A_DC2_DT3 | AAA | AA00 | 85 | 0.14 |
| 03 | 7rva_A_DT3_DG4 | A-B | AB01 | 77 | 0.23 |
| 04 | 7rva_A_DG4_DT5 | BBB | BB00 | 94 | 0.13 |
| 05 | 7rva_A_DT5_DG6 | B12 | BB04 | 88 | 0.13 |
| 06 | 7rva_A_DG6_DA7 | BBB | BB00 | 82 | 0.13 |
| 07 | 7rva_A_DA7_DC8 | BBB | BB00 | 75 | 0.20 |
| 08 | 7rva_A_DC8_DA9 | BBB | BB00 | 45 | 0.24 |
| 09 | 7rva_A_DA9_DA10 | BBB | BB00 | 70 | 0.16 |
| 10 | 7rva_A_DA10_DA11 | BBB | BB00 | 86 | 0.22 |
| 11 | 7rva_A_DA11_DT12 | BBB | BB01 | 60 | 0.22 |
| 12 | 7rva_A_DT12_DT13 | B-A | BA05 | 29 | 0.43 |
| 13 | 7rva_A_DT13_DG14 | A-B | AB01 | 67 | 0.23 |
| 14 | 7rva_A_DG14_DC15 | BBw | BB02 | 82 | 0.13 |
| 15 | 7rva_A_DC15_DC16 | BBB | BB01 | 60 | 0.23 |
| 16 | 7rva_A_DC16_DC17 | BBB | BB01 | 64 | 0.17 |
| 17 | 7rva_A_DC17_DT18 | BBB | BB00 | 89 | 0.18 |
| 18 | 7rva_A_DT18_DC19 | B12 | BB04 | 58 | 0.48 |
| 19 | 7rva_A_DC19_DA20 | B12 | BB04 | 47 | 0.27 |
| 20 | 7rva_A_DA20_DG21 | BBB | BB00 | 90 | 0.19 |
| 21 | 7rva_B_DC23_DT24 | A-B | AB05 | 50 | 0.19 |
| 22 | 7rva_B_DT24_DG25 | BBB | BB00 | 71 | 0.33 |
| 23 | 7rva_B_DG25_DA26 | BB2 | BB07 | 79 | 0.23 |
| 24 | 7rva_B_DA26_DG27 | B-A | BA10 | 79 | 0.18 |
| 25 | 7rva_B_DG27_DG28 | A-B | AB01 | 41 | 0.32 |
| 26 | 7rva_B_DG28_DG29 | B-A | BA05 | 25 | 0.21 |
| 27 | 7rva_B_DG29_DC30 | AAA | AA00 | 33 | 0.37 |
| 28 | 7rva_B_DC30_DA31 | A-B | AB03 | 77 | 0.37 |
| 29 | 7rva_B_DA31_DA32 | BBB | BB00 | 82 | 0.24 |
| 30 | 7rva_B_DA32_DT33 | BBB | BB00 | 85 | 0.17 |
| 31 | 7rva_B_DT33_DT34 | BBB | BB00 | 90 | 0.19 |
| 32 | 7rva_B_DT34_DT35 | BBB | BB00 | 88 | 0.21 |
| 33 | 7rva_B_DT35_DG36 | BBB | BB00 | 84 | 0.19 |
| 34 | 7rva_B_DG36_DT37 | BBB | BB01 | 47 | 0.18 |
| 35 | 7rva_B_DT37_DC38 | BBB | BB01 | 61 | 0.23 |
| 36 | 7rva_B_DC38_DA39 | B12 | BB04 | 47 | 0.22 |
| 37 | 7rva_B_DA39_DC40 | BBB | BB01 | 25 | 0.33 |
| 38 | 7rva_B_DC40_DA41 | A-B | AB03 | 93 | 0.24 |
| 39 | 7rva_B_DA41_DG42 | B-A | BA05 | 78 | 0.23 |
| 40 | 7rva_B_DG42_DG43 | BBB | BB00 | 33 | 0.44 |
| 41 | 7rva_B_DG43_DT44 | NAN | NANT | 0 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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