DNATCO v4.1: results

Crystal structure of the methyltransferase-ribozyme 1 (with 1-benzylamine-adenosine)

Results of the assignment of 114 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7q7z_A_C1_C2	AAA	AA00	84	0.20	AA00
002	7q7z_A_C2_A3	AAA	AA00	88	0.10	AA00
003	7q7z_A_A3_C4	AAA	AA00	88	0.09	AA00
004	7q7z_A_C4_U5	AAA	AA00	91	0.13	AA00
005	7q7z_A_U5_G6	AAw	AA10	57	0.28	AA10
006	7q7z_A_G8_A9	AAA	AA00	86	0.14	AA00
007	7q7z_A_A9_G10	AAA	AA00	92	0.07	AA00
008	7q7z_A_G10_C11	AAw	AA10	66	0.31	AA10
009	7q7z_A_C11_U12	AAA	AA08	66	0.24	AA08
010	7q7z_A_U12_U13	AAA	AA08	94	0.12	AA08
011	7q7z_A_U13_C14	A-B	AB05	88	0.20	AB05
012	7q7z_B_G1_G2	AAA	AA00	64	0.23	AA00
013	7q7z_B_G2_A3	AAA	AA00	88	0.10	AA00
014	7q7z_B_A3_A4	AAA	AA08	84	0.14	AA08
015	7q7z_B_A4_G5	AAA	AA00	93	0.07	AA00
016	7q7z_B_G5_C6	AAA	AA00	85	0.19	AA00
017	7q7z_B_C6_U7	AAA	AA00	84	0.11	AA00
018	7q7z_B_U7_C8	NAN	NANT	0	0.36	AA10
019	7q7z_B_C8_U9	AAA	AA00	70	0.28	AA00
020	7q7z_B_U9_G10	A-B	AB05	94	0.15	AB05
021	7q7z_B_G10_A11	NAN	NANT	0	0.99	OP14
022	7q7z_B_A11_C12	AAA	AA00	60	0.33	AA00
023	7q7z_B_C12_C13	AAA	AA00	83	0.25	AA00
024	7q7z_B_C13_G14	AAA	AA00	88	0.14	AA00
025	7q7z_B_G14_A15	OPN	OP07	19	0.42	OP07
026	7q7z_B_A15_C16	AAA	AA00	80	0.21	AA00
027	7q7z_B_C16_C17	AAA	AA08	76	0.37	AA08
028	7q7z_B_C17_C18	NAN	NANT	0	0.57	AA03
029	7q7z_B_C18_C19	AAA	AA00	80	0.22	AA00
030	7q7z_B_C19_C20	AAA	AA00	82	0.16	AA00
031	7q7z_B_C20_A21	AAA	AA00	80	0.14	AA00
032	7q7z_B_A21_G22	AAA	AA00	84	0.07	AA00
033	7q7z_B_G22_C23	AAA	AA00	27	0.38	AA00
034	7q7z_B_C23_C24	NAN	NANT	0	0.89	OP03
035	7q7z_C_G25_C26	AAA	AA00	76	0.20	AA00
036	7q7z_C_C26_U27	AAA	AA00	87	0.14	AA00
037	7q7z_C_U27_G28	AAA	AA00	89	0.12	AA00
038	7q7z_C_G28_G29	AAA	AA08	92	0.18	AA08
039	7q7z_C_G29_G30	AAA	AA00	86	0.12	AA00
040	7q7z_C_G30_A31	AAA	AA08	98	0.19	AA08
041	7q7z_C_A31_C32	AAA	AA08	94	0.18	AA08
042	7q7z_C_C32_A33	ZZZ	ZZ01	91	0.11	ZZ01
043	7q7z_C_A33_A34	NAN	NANT	0	2.04	OP19
044	7q7z_C_A34_C35	NAN	NANT	0	0.90	OP26
045	7q7z_C_C35_U36	NAN	NANT	0	0.78	OP13
046	7q7z_C_U36_A37	NAN	NANT	0	2.02	IC03
047	7q7z_C_A37_G38	NAN	NANT	0	1.04	ZZ1S
048	7q7z_C_G38_A39	NAN	NANT	0	1.34	OP30
049	7q7z_C_A39_C40	AAA	AA00	49	0.38	AA00
050	7q7z_C_C40_A41	AAA	AA00	75	0.26	AA00
051	7q7z_C_A41_U42	AAA	AA00	71	0.25	AA00
052	7q7z_C_U42_A43	AAw	AA01	48	0.36	AA01
053	7q7z_C_A43_C44	AAA	AA08	14	0.36	AA08
054	7q7z_C_C44_A45	AAA	AA00	85	0.10	AA00
055	7q7z_C_A45_G46	AAA	AA00	88	0.10	AA00
056	7q7z_C_G46_U47	AAA	AA00	93	0.09	AA00
057	7q7z_C_U47_G48	AAA	AA00	89	0.12	AA00
058	7q7z_D_C1_C2	AAA	AA00	86	0.19	AA00
059	7q7z_D_C2_A3	AAA	AA00	83	0.13	AA00
060	7q7z_D_A3_C4	AAA	AA00	84	0.13	AA00
061	7q7z_D_C4_U5	AAA	AA00	92	0.12	AA00
062	7q7z_D_U5_G6	AAA	AA00	85	0.17	AA00
063	7q7z_D_G8_A9	AAA	AA00	88	0.12	AA00
064	7q7z_D_A9_G10	AAA	AA00	81	0.13	AA00
065	7q7z_D_G10_C11	AAw	AA10	47	0.36	AA10
066	7q7z_D_C11_U12	AAA	AA08	62	0.26	AA08
067	7q7z_D_U12_U13	AAA	AA08	83	0.26	AA08
068	7q7z_D_U13_C14	NAN	NANT	0	0.83	AA11
069	7q7z_E_G1_G2	AAA	AA00	69	0.22	AA00
070	7q7z_E_G2_A3	AAA	AA00	75	0.19	AA00
071	7q7z_E_A3_A4	AAA	AA00	79	0.12	AA00
072	7q7z_E_A4_G5	AAA	AA00	87	0.14	AA00
073	7q7z_E_G5_C6	AAw	AA01	50	0.43	AA01
074	7q7z_E_C6_U7	AAA	AA08	88	0.14	AA08
075	7q7z_E_U7_C8	AAA	AA00	76	0.12	AA00
076	7q7z_E_C8_U9	AAA	AA00	86	0.12	AA00
077	7q7z_E_U9_G10	NAN	NANT	0	0.64	AA10
078	7q7z_E_G10_A11	NAN	NANT	0	0.75	OP02
079	7q7z_E_A11_C12	NAN	NANT	0	0.46	AA03
080	7q7z_E_C12_C13	AAA	AA00	73	0.25	AA00
081	7q7z_E_C13_G14	AAA	AA00	89	0.11	AA00
082	7q7z_E_G14_A15	OPN	OP02	21	0.40	OP02
083	7q7z_E_A15_C16	AAA	AA08	93	0.13	AA08
084	7q7z_E_C16_C17	AAA	AA08	84	0.18	AA08
085	7q7z_E_C17_C18	NAN	NANT	0	0.74	AA03
086	7q7z_E_C18_C19	AAA	AA00	93	0.11	AA00
087	7q7z_E_C19_C20	AAA	AA00	96	0.09	AA00
088	7q7z_E_C20_A21	AAA	AA00	85	0.12	AA00
089	7q7z_E_A21_G22	NAN	NANT	0	0.66	AA10
090	7q7z_E_G22_C23	NAN	NANT	0	0.73	AA01
091	7q7z_E_C23_C24	NAN	NANT	0	1.20	OP03
092	7q7z_F_G25_C26	AAu	AA12	70	0.29	AA12
093	7q7z_F_C26_U27	AAA	AA00	81	0.20	AA00
094	7q7z_F_U27_G28	AAA	AA00	78	0.16	AA00
095	7q7z_F_G28_G29	AAA	AA08	65	0.36	AA08
096	7q7z_F_G29_G30	AAA	AA00	82	0.12	AA00
097	7q7z_F_G30_A31	AAA	AA08	87	0.23	AA08
098	7q7z_F_A31_C32	AAA	AA08	84	0.21	AA08
099	7q7z_F_C32_A33	ZZZ	ZZ01	93	0.12	ZZ01
100	7q7z_F_A33_A34	NAN	NANT	0	2.04	OP19
101	7q7z_F_A34_C35	NAN	NANT	0	0.94	OP26
102	7q7z_F_C35_U36	NAN	NANT	0	0.88	OP13
103	7q7z_F_U36_A37	NAN	NANT	0	0.53	OP13
104	7q7z_F_A37_G38	NAN	NANT	0	0.96	OP1S
105	7q7z_F_G38_A39	NAN	NANT	0	1.44	OP30
106	7q7z_F_A39_C40	AAA	AA00	61	0.29	AA00
107	7q7z_F_C40_A41	AAA	AA00	65	0.32	AA00
108	7q7z_F_A41_U42	AAA	AA00	80	0.23	AA00
109	7q7z_F_U42_A43	AAA	AA00	45	0.33	AA00
110	7q7z_F_A43_C44	AAA	AA00	87	0.20	AA00
111	7q7z_F_C44_A45	AAA	AA00	87	0.13	AA00
112	7q7z_F_A45_G46	AAA	AA00	89	0.11	AA00
113	7q7z_F_G46_U47	AAA	AA00	90	0.14	AA00
114	7q7z_F_U47_G48	AAA	AA00	93	0.10	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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N

Results of the assignment of 114 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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