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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the methyltransferase-ribozyme 1 (with 1-methyl-adenosine)

Results of the assignment of 59 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017q7x_A_C1_C2AAAAA00640.27 AA00
027q7x_A_C2_A3AAAAA00900.10 AA00
037q7x_A_A3_C4AAAAA08910.12 AA08
047q7x_A_C4_U5AAAAA00960.11 AA00
057q7x_A_U5_G6AAAAA00940.12 AA00
067q7x_A_G6_1MA7NANNANT00.55 IC03
077q7x_A_1MA7_G8NANNANT00.57 OP16
087q7x_A_G8_A9AAAAA00890.10 AA00
097q7x_A_A9_G10AAAAA00790.11 AA00
107q7x_A_G10_C11NANNANT00.41 AA10
117q7x_A_C11_U12AAAAA08850.20 AA08
127q7x_A_U12_U13AAAAA08900.11 AA08
137q7x_A_U13_C14NANNANT00.52 AA10
147q7x_B_G1_G2AAAAA00740.21 AA00
157q7x_B_G2_A3AAAAA00770.14 AA00
167q7x_B_A3_A4AAAAA08930.21 AA08
177q7x_B_A4_G5AAAAA08870.30 AA08
187q7x_B_G5_C6AAAAA00940.13 AA00
197q7x_B_C6_U7AAAAA00800.20 AA00
207q7x_B_U7_C8AAAAA00960.12 AA00
217q7x_B_C8_U9AAAAA00930.15 AA00
227q7x_B_U9_G10AAAAA00910.12 AA00
237q7x_B_G10_A11NANNANT01.50 OP05
247q7x_B_A11_C12AAAAA00700.32 AA00
257q7x_B_C12_C13AAAAA00650.29 AA00
267q7x_B_C13_G14AAAAA00940.12 AA00
277q7x_B_G14_A15OPNOP02370.38 OP02
287q7x_B_A15_C16AAAAA00760.21 AA00
297q7x_B_C16_C17AAAAA08810.35 AA08
307q7x_B_C17_C18AAAAA00510.38 AA00
317q7x_B_C18_C19AAAAA00860.17 AA00
327q7x_B_C19_C20AAAAA00850.17 AA00
337q7x_B_C20_A21AAAAA00900.09 AA00
347q7x_B_A21_G22AAAAA00870.10 AA00
357q7x_B_G22_C23AAAAA00920.13 AA00
367q7x_B_C23_C24NANNANT00.84 ZZ01
377q7x_C_G25_C26AAAAA00910.12 AA00
387q7x_C_C26_U27AAAAA00900.18 AA00
397q7x_C_U27_G28AAAAA00860.16 AA00
407q7x_C_G28_G29AAAAA00870.12 AA00
417q7x_C_G29_G30AAAAA00860.13 AA00
427q7x_C_G30_A31AAAAA08900.20 AA08
437q7x_C_A31_C32AAAAA00600.35 AA00
447q7x_C_C32_A33ZZZZZ01920.11 ZZ01
457q7x_C_A33_A34NANNANT02.10 OP19
467q7x_C_A34_C35NANNANT00.95 OP22
477q7x_C_C35_U36NANNANT01.87 OP17
487q7x_C_U36_A37NANNANT00.74 OP17
497q7x_C_A37_G38NANNANT01.13 ZZ1S
507q7x_C_G38_A39NANNANT01.35 OP30
517q7x_C_A39_C40AAAAA00460.32 AA00
527q7x_C_C40_A41AAAAA00740.28 AA00
537q7x_C_A41_U42AAAAA00750.23 AA00
547q7x_C_U42_A43AAAAA00500.31 AA00
557q7x_C_A43_C44AAAAA00680.25 AA00
567q7x_C_C44_A45AAAAA00850.11 AA00
577q7x_C_A45_G46AAAAA00880.11 AA00
587q7x_C_G46_U47AAAAA00860.09 AA00
597q7x_C_U47_G48AAAAA00880.14 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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