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Conformers: ABBIImiBZICOPNSYNN
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The solution structure of hsDND1 RRM12 bound to CUUAUUUG RNA

Results of the assignment of 140 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017q4l-m10_B_C1_U2NANNANT01.70 BB08
0027q4l-m11_B_C1_U2NANNANT01.93 BB15
0037q4l-m12_B_C1_U2NANNANT01.65 BB08
0047q4l-m13_B_C1_U2NANNANT00.69 BA10
0057q4l-m14_B_C1_U2NANNANT01.47 BB08
0067q4l-m15_B_C1_U2NANNANT01.42 BB08
0077q4l-m16_B_C1_U2NANNANT01.91 IC03
0087q4l-m17_B_C1_U2NANNANT01.65 BB08
0097q4l-m18_B_C1_U2NANNANT01.77 IC03
0107q4l-m19_B_C1_U2NANNANT01.47 BB08
0117q4l-m1_B_C1_U2NANNANT01.71 BB08
0127q4l-m20_B_C1_U2NANNANT01.62 BB08
0137q4l-m2_B_C1_U2NANNANT01.69 BB08
0147q4l-m3_B_C1_U2NANNANT01.50 BB08
0157q4l-m4_B_C1_U2NANNANT01.64 BB08
0167q4l-m5_B_C1_U2NANNANT01.69 BB08
0177q4l-m6_B_C1_U2NANNANT01.93 IC03
0187q4l-m7_B_C1_U2NANNANT01.50 BB08
0197q4l-m8_B_C1_U2NANNANT01.93 IC03
0207q4l-m9_B_C1_U2NANNANT01.90 IC03
0217q4l-m10_B_U2_U3NANNANT00.63 OP20
0227q4l-m11_B_U2_U3NANNANT00.86 OP20
0237q4l-m12_B_U2_U3NANNANT00.66 OP20
0247q4l-m13_B_U2_U3NANNANT00.62 IC05
0257q4l-m14_B_U2_U3NANNANT00.65 OP20
0267q4l-m15_B_U2_U3NANNANT00.71 OP20
0277q4l-m16_B_U2_U3NANNANT00.65 OP20
0287q4l-m17_B_U2_U3NANNANT00.68 OP20
0297q4l-m18_B_U2_U3NANNANT00.71 OP20
0307q4l-m19_B_U2_U3NANNANT00.79 OP20
0317q4l-m1_B_U2_U3NANNANT00.56 OP20
0327q4l-m20_B_U2_U3NANNANT00.67 OP20
0337q4l-m2_B_U2_U3NANNANT00.62 OP20
0347q4l-m3_B_U2_U3NANNANT01.01 IC03
0357q4l-m4_B_U2_U3NANNANT00.69 OP20
0367q4l-m5_B_U2_U3NANNANT00.62 OP20
0377q4l-m6_B_U2_U3NANNANT00.55 OP20
0387q4l-m7_B_U2_U3NANNANT00.75 OP20
0397q4l-m8_B_U2_U3NANNANT00.52 OP20
0407q4l-m9_B_U2_U3NANNANT00.60 OP20
0417q4l-m10_B_U3_A4NANNANT01.12 IC05
0427q4l-m11_B_U3_A4NANNANT01.01 IC05
0437q4l-m12_B_U3_A4NANNANT00.56 OP26
0447q4l-m13_B_U3_A4NANNANT01.02 IC05
0457q4l-m14_B_U3_A4NANNANT00.60 OP26
0467q4l-m15_B_U3_A4NANNANT00.91 IC05
0477q4l-m16_B_U3_A4NANNANT01.00 IC05
0487q4l-m17_B_U3_A4NANNANT01.09 IC05
0497q4l-m18_B_U3_A4NANNANT01.07 IC05
0507q4l-m19_B_U3_A4NANNANT00.92 IC05
0517q4l-m1_B_U3_A4NANNANT00.65 OP26
0527q4l-m20_B_U3_A4NANNANT01.07 IC05
0537q4l-m2_B_U3_A4NANNANT01.09 IC05
0547q4l-m3_B_U3_A4NANNANT01.06 IC05
0557q4l-m4_B_U3_A4NANNANT01.10 IC05
0567q4l-m5_B_U3_A4NANNANT01.11 IC05
0577q4l-m6_B_U3_A4NANNANT01.10 IC05
0587q4l-m7_B_U3_A4NANNANT01.02 IC05
0597q4l-m8_B_U3_A4NANNANT01.12 IC05
0607q4l-m9_B_U3_A4NANNANT01.09 IC05
0617q4l-m10_B_A4_U5NANNANT00.49 BB08
0627q4l-m11_B_A4_U5NANNANT00.55 BB08
0637q4l-m12_B_A4_U5NANNANT00.47 BB08
0647q4l-m13_B_A4_U5NANNANT00.47 BB08
0657q4l-m14_B_A4_U5NANNANT00.41 BB08
0667q4l-m15_B_A4_U5B12BB04420.30 BB04
0677q4l-m16_B_A4_U5B12BB04400.42 BB04
0687q4l-m17_B_A4_U5NANNANT00.51 BB08
0697q4l-m18_B_A4_U5NANNANT00.58 BB08
0707q4l-m19_B_A4_U5B12BB04470.35 BB04
0717q4l-m1_B_A4_U5NANNANT00.51 BB08
0727q4l-m20_B_A4_U5NANNANT00.49 BB08
0737q4l-m2_B_A4_U5NANNANT00.45 BB08
0747q4l-m3_B_A4_U5NANNANT00.48 BB08
0757q4l-m4_B_A4_U5NANNANT00.52 BB08
0767q4l-m5_B_A4_U5NANNANT00.51 BB08
0777q4l-m6_B_A4_U5NANNANT00.45 BB08
0787q4l-m7_B_A4_U5NANNANT00.46 BB08
0797q4l-m8_B_A4_U5NANNANT00.46 BB08
0807q4l-m9_B_A4_U5NANNANT00.50 BB08
0817q4l-m10_B_U5_U6NANNANT01.02 OP20
0827q4l-m11_B_U5_U6NANNANT01.03 ZZ01
0837q4l-m12_B_U5_U6NANNANT00.45 OP12
0847q4l-m13_B_U5_U6NANNANT00.93 OP20
0857q4l-m14_B_U5_U6NANNANT00.91 OP20
0867q4l-m15_B_U5_U6NANNANT01.02 OP20
0877q4l-m16_B_U5_U6NANNANT01.39 ZZ01
0887q4l-m17_B_U5_U6NANNANT01.37 IC03
0897q4l-m18_B_U5_U6NANNANT01.37 IC03
0907q4l-m19_B_U5_U6NANNANT00.93 OP20
0917q4l-m1_B_U5_U6NANNANT01.35 ZZ01
0927q4l-m20_B_U5_U6NANNANT00.52 OP12
0937q4l-m2_B_U5_U6NANNANT01.03 OP20
0947q4l-m3_B_U5_U6NANNANT01.46 ZZ01
0957q4l-m4_B_U5_U6NANNANT00.52 OP12
0967q4l-m5_B_U5_U6NANNANT01.23 ZZ01
0977q4l-m6_B_U5_U6NANNANT00.91 OP20
0987q4l-m7_B_U5_U6NANNANT00.41 OP12
0997q4l-m8_B_U5_U6NANNANT00.82 OP20
1007q4l-m9_B_U5_U6NANNANT00.53 OP12
1017q4l-m10_B_U6_U7NANNANT01.71 ZZ2S
1027q4l-m11_B_U6_U7NANNANT01.70 IC03
1037q4l-m12_B_U6_U7NANNANT01.63 IC03
1047q4l-m13_B_U6_U7NANNANT01.64 IC03
1057q4l-m14_B_U6_U7NANNANT01.71 IC03
1067q4l-m15_B_U6_U7NANNANT01.62 IC03
1077q4l-m16_B_U6_U7NANNANT01.66 IC03
1087q4l-m17_B_U6_U7NANNANT01.58 IC03
1097q4l-m18_B_U6_U7NANNANT01.58 IC03
1107q4l-m19_B_U6_U7NANNANT01.60 IC03
1117q4l-m1_B_U6_U7NANNANT01.76 IC03
1127q4l-m20_B_U6_U7NANNANT01.63 IC04
1137q4l-m2_B_U6_U7NANNANT01.70 BB1S
1147q4l-m3_B_U6_U7NANNANT01.67 BB2S
1157q4l-m4_B_U6_U7NANNANT01.66 BB1S
1167q4l-m5_B_U6_U7NANNANT01.53 IC03
1177q4l-m6_B_U6_U7NANNANT01.71 ZZ2S
1187q4l-m7_B_U6_U7NANNANT01.60 IC03
1197q4l-m8_B_U6_U7NANNANT01.65 IC03
1207q4l-m9_B_U6_U7NANNANT01.72 IC04
1217q4l-m10_B_U7_G8NANNANT01.44 BB20
1227q4l-m11_B_U7_G8NANNANT01.01 BB08
1237q4l-m12_B_U7_G8NANNANT01.08 ZZS1
1247q4l-m13_B_U7_G8NANNANT01.60 AB02
1257q4l-m14_B_U7_G8NANNANT01.51 BB20
1267q4l-m15_B_U7_G8NANNANT00.83 BB08
1277q4l-m16_B_U7_G8NANNANT01.00 BB08
1287q4l-m17_B_U7_G8NANNANT01.01 ZZS1
1297q4l-m18_B_U7_G8NANNANT01.13 BB08
1307q4l-m19_B_U7_G8NANNANT01.32 ZZS1
1317q4l-m1_B_U7_G8NANNANT00.91 BB08
1327q4l-m20_B_U7_G8NANNANT01.68 BB15
1337q4l-m2_B_U7_G8NANNANT01.47 ZZS1
1347q4l-m3_B_U7_G8NANNANT01.01 OP24
1357q4l-m4_B_U7_G8NANNANT00.78 ZZS1
1367q4l-m5_B_U7_G8NANNANT00.86 BA16
1377q4l-m6_B_U7_G8NANNANT01.50 BB20
1387q4l-m7_B_U7_G8NANNANT01.46 ZZS1
1397q4l-m8_B_U7_G8NANNANT01.59 ZZS1
1407q4l-m9_B_U7_G8NANNANT01.17 OP04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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