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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Solution structure of RBM39 RRM2 bound to 5'-AGCUUUG-3

Results of the assignment of 120 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017q33-m10_B_A701_G702NANNANT01.20 AB2S
0027q33-m11_B_A701_G702NANNANT01.04 AB2S
0037q33-m12_B_A701_G702NANNANT00.72 BB2S
0047q33-m13_B_A701_G702NANNANT01.29 AB2S
0057q33-m14_B_A701_G702NANNANT00.86 AB1S
0067q33-m15_B_A701_G702NANNANT00.71 AB1S
0077q33-m16_B_A701_G702NANNANT00.79 AB1S
0087q33-m17_B_A701_G702NANNANT01.02 AB2S
0097q33-m18_B_A701_G702NANNANT00.66 AB1S
0107q33-m19_B_A701_G702NANNANT00.85 AB1S
0117q33-m1_B_A701_G702NANNANT01.13 AB2S
0127q33-m20_B_A701_G702NANNANT00.70 BB2S
0137q33-m2_B_A701_G702NANNANT00.64 AB1S
0147q33-m3_B_A701_G702NANNANT01.07 AB2S
0157q33-m4_B_A701_G702NANNANT00.83 AB1S
0167q33-m5_B_A701_G702NANNANT01.14 AB2S
0177q33-m6_B_A701_G702NANNANT01.12 AB2S
0187q33-m7_B_A701_G702NANNANT01.10 AB2S
0197q33-m8_B_A701_G702NANNANT00.83 AB1S
0207q33-m9_B_A701_G702NANNANT01.14 AB2S
0217q33-m10_B_G702_C703NANNANT01.00 OP24
0227q33-m11_B_G702_C703NANNANT00.74 BA17
0237q33-m12_B_G702_C703NANNANT00.95 AAS1
0247q33-m13_B_G702_C703NANNANT01.05 OP24
0257q33-m14_B_G702_C703NANNANT00.77 AB02
0267q33-m15_B_G702_C703NANNANT01.03 AAS1
0277q33-m16_B_G702_C703NANNANT01.17 OP24
0287q33-m17_B_G702_C703NANNANT00.84 BA17
0297q33-m18_B_G702_C703NANNANT00.79 BA17
0307q33-m19_B_G702_C703NANNANT00.87 AB02
0317q33-m1_B_G702_C703NANNANT00.78 BA17
0327q33-m20_B_G702_C703NANNANT01.05 BBS1
0337q33-m2_B_G702_C703NANNANT00.76 BA17
0347q33-m3_B_G702_C703NANNANT00.73 BA17
0357q33-m4_B_G702_C703NANNANT00.77 AB02
0367q33-m5_B_G702_C703NANNANT00.81 BA17
0377q33-m6_B_G702_C703NANNANT00.75 BA17
0387q33-m7_B_G702_C703NANNANT00.74 BA17
0397q33-m8_B_G702_C703NANNANT00.79 AB02
0407q33-m9_B_G702_C703NANNANT01.08 OP24
0417q33-m10_B_C703_U704NANNANT01.42 IC03
0427q33-m11_B_C703_U704NANNANT01.61 IC03
0437q33-m12_B_C703_U704NANNANT02.13 OP09
0447q33-m13_B_C703_U704NANNANT01.64 OP17
0457q33-m14_B_C703_U704NANNANT01.60 IC03
0467q33-m15_B_C703_U704NANNANT01.81 OP17
0477q33-m16_B_C703_U704NANNANT01.64 OP17
0487q33-m17_B_C703_U704NANNANT01.80 OP17
0497q33-m18_B_C703_U704NANNANT01.82 OP17
0507q33-m19_B_C703_U704NANNANT01.88 OP17
0517q33-m1_B_C703_U704NANNANT01.41 OP29
0527q33-m20_B_C703_U704NANNANT01.61 OP18
0537q33-m2_B_C703_U704NANNANT01.46 OP29
0547q33-m3_B_C703_U704NANNANT01.69 IC03
0557q33-m4_B_C703_U704NANNANT01.59 IC03
0567q33-m5_B_C703_U704NANNANT01.65 OP17
0577q33-m6_B_C703_U704NANNANT01.62 IC03
0587q33-m7_B_C703_U704NANNANT01.72 IC03
0597q33-m8_B_C703_U704NANNANT01.96 OP17
0607q33-m9_B_C703_U704NANNANT02.05 OP09
0617q33-m10_B_U704_U705NANNANT00.76 IC02
0627q33-m11_B_U704_U705NANNANT00.69 AA02
0637q33-m12_B_U704_U705NANNANT00.59 AA12
0647q33-m13_B_U704_U705NANNANT00.82 AA12
0657q33-m14_B_U704_U705NANNANT00.98 BB00
0667q33-m15_B_U704_U705NANNANT00.79 IC02
0677q33-m16_B_U704_U705NANNANT01.37 BB11
0687q33-m17_B_U704_U705NANNANT00.85 AB1S
0697q33-m18_B_U704_U705NANNANT00.76 IC02
0707q33-m19_B_U704_U705NANNANT00.81 AB04
0717q33-m1_B_U704_U705NANNANT00.69 AA02
0727q33-m20_B_U704_U705NANNANT00.78 AB04
0737q33-m2_B_U704_U705NANNANT00.57 AA02
0747q33-m3_B_U704_U705NANNANT01.07 BB02
0757q33-m4_B_U704_U705NANNANT01.01 BB00
0767q33-m5_B_U704_U705NANNANT00.84 AA12
0777q33-m6_B_U704_U705NANNANT00.74 AA02
0787q33-m7_B_U704_U705NANNANT00.90 BB00
0797q33-m8_B_U704_U705NANNANT00.56 AA02
0807q33-m9_B_U704_U705NANNANT01.51 BB08
0817q33-m10_B_U705_U706NANNANT00.90 BB14
0827q33-m11_B_U705_U706NANNANT01.23 BB16
0837q33-m12_B_U705_U706NANNANT00.89 BB00
0847q33-m13_B_U705_U706NANNANT01.09 BB20
0857q33-m14_B_U705_U706NANNANT00.91 BB00
0867q33-m15_B_U705_U706NANNANT00.91 BB01
0877q33-m16_B_U705_U706NANNANT00.99 BB00
0887q33-m17_B_U705_U706NANNANT01.30 BB16
0897q33-m18_B_U705_U706NANNANT00.91 BB01
0907q33-m19_B_U705_U706NANNANT00.89 BB01
0917q33-m1_B_U705_U706NANNANT01.28 BB20
0927q33-m20_B_U705_U706NANNANT01.17 BB20
0937q33-m2_B_U705_U706NANNANT00.98 BB00
0947q33-m3_B_U705_U706NANNANT00.93 BB14
0957q33-m4_B_U705_U706NANNANT00.86 BB01
0967q33-m5_B_U705_U706NANNANT00.93 BB14
0977q33-m6_B_U705_U706NANNANT01.25 BB16
0987q33-m7_B_U705_U706NANNANT01.25 BB20
0997q33-m8_B_U705_U706NANNANT01.27 BB16
1007q33-m9_B_U705_U706NANNANT00.96 BB14
1017q33-m10_B_U706_G707OPNOP22350.59 OP22
1027q33-m11_B_U706_G707OPNOP22290.66 OP22
1037q33-m12_B_U706_G707OPNOP22270.61 OP22
1047q33-m13_B_U706_G707NANNANT00.97 OP26
1057q33-m14_B_U706_G707NANNANT00.61 OP22
1067q33-m15_B_U706_G707NANNANT00.58 OP22
1077q33-m16_B_U706_G707OPNOP22310.67 OP22
1087q33-m17_B_U706_G707NANNANT00.93 OP26
1097q33-m18_B_U706_G707NANNANT00.62 OP22
1107q33-m19_B_U706_G707NANNANT00.61 OP22
1117q33-m1_B_U706_G707OPNOP22400.61 OP22
1127q33-m20_B_U706_G707NANNANT00.59 OP22
1137q33-m2_B_U706_G707OPNOP22390.71 OP22
1147q33-m3_B_U706_G707OPNOP22230.57 OP22
1157q33-m4_B_U706_G707NANNANT00.60 OP22
1167q33-m5_B_U706_G707OPNOP22170.58 OP22
1177q33-m6_B_U706_G707OPNOP22300.65 OP22
1187q33-m7_B_U706_G707NANNANT00.63 OP22
1197q33-m8_B_U706_G707OPNOP22380.68 OP22
1207q33-m9_B_U706_G707NANNANT00.57 OP22

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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