Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Arbitrium receptor from Katmira phage

Results of the assignment of 88 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017q0n_C_DG1_DG2BBBBB00470.38 BB00
027q0n_C_DG2_DC3BBBBB01690.26 BB01
037q0n_C_DC3_DC4BBBBB00230.24 BB00
047q0n_C_DC4_DA5NANNANT00.30 BB04
057q0n_C_DA5_DT6B-ABA01310.42 BA01
067q0n_C_DT6_DC7A-BAB01640.56 AB01
077q0n_C_DC7_DA8BB2BB07840.22 BB07
087q0n_C_DA8_DC9NANNANT00.51 BB08
097q0n_C_DC9_DT10BBBBB00390.39 BB00
107q0n_C_DT10_DA11BBBBB00570.42 BB00
117q0n_C_DA11_DG12BBBBB00250.26 BB00
127q0n_C_DG12_DA13B-ABA17850.21 BA17
137q0n_C_DA13_DT14BBBBB00180.26 BB00
147q0n_C_DT14_DG15miBBB10640.35 BB10
157q0n_C_DG15_DT16BBBBB00330.46 BB00
167q0n_C_DT16_DT17BBBBB00150.32 BB00
177q0n_C_DT17_DA18miBBB14690.28 BB14
187q0n_C_DA18_DT19NANNANT00.48 BB07
197q0n_C_DT19_DA20BBwBB11340.51 BB11
207q0n_C_DA20_DA21BBBBB00230.42 BB00
217q0n_C_DA21_DA22BBBBB00750.24 BB00
227q0n_C_DA22_DA23NANNANT00.29 BA13
237q0n_C_DA23_DA24NANNANT00.46 BB17
247q0n_C_DA24_DC25BBwBB17610.31 BB17
257q0n_C_DC25_DT26BBwBB11470.34 BB11
267q0n_C_DT26_DT27BBwBB16560.39 BB16
277q0n_C_DT27_DA28NANNANT00.41 BB07
287q0n_C_DA28_DA29NANNANT00.50 BA17
297q0n_C_DA29_DT30NANNANT00.75 AB02
307q0n_C_DT30_DA31BBBBB00180.43 BB00
317q0n_C_DA31_DT32B-ABA08570.39 BA08
327q0n_C_DT32_DT33A-BAB03800.26 AB03
337q0n_C_DT33_DT34B-ABA08640.28 BA08
347q0n_C_DT34_DA35A-BAB03640.40 AB03
357q0n_C_DA35_DA36BBBBB00640.27 BB00
367q0n_C_DA36_DG37B-ABA13460.29 BA13
377q0n_C_DG37_DT38NANNANT00.34 AB04
387q0n_C_DT38_DG39BBBBB00700.20 BB00
397q0n_C_DG39_DA40NANNANT00.57 BB13
407q0n_C_DA40_DT41BBwBB16320.38 BB16
417q0n_C_DT41_DC42NANNANT00.39 BA08
427q0n_C_DC42_DA43NANNANT00.66 AB2S
437q0n_C_DA43_DA44NANNANT00.56 BBS1
447q0n_C_DA44_DC45NANNANT00.32 BBS1
457q0n_D_DG1_DT2BBBBB00520.38 BB00
467q0n_D_DT2_DT3BBBBB00830.17 BB00
477q0n_D_DT3_DG4NANNANT00.27 BB10
487q0n_D_DG4_DA5B12BB04330.28 BB04
497q0n_D_DA5_DT6B-ABA05640.22 BA05
507q0n_D_DT6_DC7AAAAA02370.57 AA02
517q0n_D_DC7_DA8NANNANT00.35 AB01
527q0n_D_DA8_DC9B-ABA13630.29 BA13
537q0n_D_DC9_DT10NANNANT00.62 AA04
547q0n_D_DT10_DT11NANNANT00.31 AB02
557q0n_D_DT11_DA12NANNANT00.48 BB07
567q0n_D_DA12_DA13BB2BB07190.32 BB07
577q0n_D_DA13_DA14BBBBB00420.21 BB00
587q0n_D_DA14_DT15miBBB10710.36 BB10
597q0n_D_DT15_DA16BBBBB00600.37 BB00
607q0n_D_DA16_DT17miBBB15550.31 BB15
617q0n_D_DT17_DT18BBBBB00450.27 BB00
627q0n_D_DT18_DA19BBBBB00270.23 BB00
637q0n_D_DA19_DA20miBBB10780.27 BB10
647q0n_D_DA20_DG21NANNANT01.06 OP24
657q0n_D_DG21_DT22NANNANT00.49 BB01
667q0n_D_DT22_DT23NANNANT00.42 BA10
677q0n_D_DT23_DT24BBwBB17530.31 BB17
687q0n_D_DT24_DT25NANNANT00.45 BA08
697q0n_D_DT25_DT26NANNANT00.53 BB15
707q0n_D_DT26_DA27BB2BB07330.43 BB07
717q0n_D_DA27_DT28NANNANT00.43 BA17
727q0n_D_DT28_DA29miBBB14440.39 BB14
737q0n_D_DA29_DA30BBwBB17550.29 BB17
747q0n_D_DA30_DC31NANNANT00.44 BB00
757q0n_D_DC31_DA32B-ABA08460.35 BA08
767q0n_D_DA32_DT33NANNANT00.46 AB02
777q0n_D_DT33_DC34NANNANT00.46 BA05
787q0n_D_DC34_DT35A-BAB01730.18 AB01
797q0n_D_DT35_DA36BBBBB00410.36 BB00
807q0n_D_DA36_DG37NANNANT00.53 BA10
817q0n_D_DG37_DT38NANNANT00.40 AB04
827q0n_D_DT38_DG39BBBBB00650.26 BB00
837q0n_D_DG39_DA40NANNANT00.48 BB2S
847q0n_D_DA40_DT41NANNANT00.65 BBS1
857q0n_D_DT41_DG42miBBB14390.34 BB14
867q0n_D_DG42_DG43BB2BB08490.25 BB08
877q0n_D_DG43_DC44BBBBB00270.41 BB00
887q0n_D_DC44_DC45BBBBB00790.22 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N