DNATCO v4.1: results

Target-bound SpCas9 complex with AAVS1 chimeric RNA-DNA guide

Results of the assignment of 116 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7oxa_A_DG1_DG2	AAA	AA00	68	0.28	AA00
002	7oxa_A_DG2_DG3	AAA	AA00	77	0.23	AA00
003	7oxa_A_DG3_DG4	AAA	AA00	93	0.13	AA00
004	7oxa_A_DG4_DC5	AAA	AA00	87	0.16	AA00
005	7oxa_A_DC5_DC6	AAA	AA00	20	0.27	AA00
006	7oxa_A_DC6_DA7	NAN	NANT	0	0.51	IC06
007	7oxa_A_DA7_DC8	B-A	BA08	41	0.38	BA08
008	7oxa_A_DC8_DT9	BBB	BB01	39	0.39	BB01
009	7oxa_A_DT9_DA10	BBB	BB00	59	0.39	BB00
010	7oxa_A_DA10_G11	BBB	BB00	83	0.19	BB00
011	7oxa_A_G11_G12	B-A	BA13	22	0.38	BA13
012	7oxa_A_G12_G13	AAA	AA00	77	0.22	AA00
013	7oxa_A_G13_A14	AAA	AA00	77	0.22	AA00
014	7oxa_A_A14_C15	AAA	AA00	75	0.18	AA00
015	7oxa_A_C15_A16	AAA	AA00	95	0.12	AA00
016	7oxa_A_A16_G17	AAw	AA01	44	0.20	AA01
017	7oxa_A_G17_G18	AAA	AA00	55	0.28	AA00
018	7oxa_A_G18_A19	AAA	AA00	85	0.14	AA00
019	7oxa_A_A19_U20	AAw	AA10	91	0.11	AA10
020	7oxa_A_U20_G21	AAA	AA00	44	0.44	AA00
021	7oxa_A_G21_U22	AAA	AA08	88	0.14	AA08
022	7oxa_A_U22_U23	AAA	AA08	89	0.17	AA08
023	7oxa_A_U23_U24	AAA	AA08	61	0.39	AA08
024	7oxa_A_U24_U25	AAA	AA00	85	0.18	AA00
025	7oxa_A_U25_A26	AAA	AA00	87	0.16	AA00
026	7oxa_A_A26_G27	AAA	AA00	68	0.17	AA00
027	7oxa_A_G27_A28	NAN	NANT	0	1.63	OP28
028	7oxa_A_A28_G29	NAN	NANT	0	1.75	OP14
029	7oxa_A_G29_C30	AAA	AA04	77	0.31	AA04
030	7oxa_A_C30_U31	AAA	AA00	97	0.10	AA00
031	7oxa_A_U31_A32	AAA	AA00	77	0.17	AA00
032	7oxa_A_A32_G33	NAN	NANT	0	0.86	BB2S
033	7oxa_A_G33_A34	NAN	NANT	0	0.75	OP04
034	7oxa_A_A34_A35	AAA	AA04	55	0.51	AA04
035	7oxa_A_A35_A36	AAA	AA03	17	0.33	AA03
036	7oxa_A_A36_U37	NAN	NANT	0	1.00	AA04
037	7oxa_A_U37_A38	AAA	AA03	79	0.21	AA03
038	7oxa_A_A38_G39	AAA	AA00	93	0.12	AA00
039	7oxa_A_G39_C40	AAA	AA00	48	0.21	AA00
040	7oxa_A_C40_A41	AAA	AA00	85	0.20	AA00
041	7oxa_A_A41_A42	AAA	AA00	82	0.33	AA00
042	7oxa_A_A42_G43	A-B	AB05	83	0.27	AB05
043	7oxa_A_G43_U44	OPN	OP20	27	0.65	OP20
044	7oxa_A_U44_U45	OPN	OP11	53	0.56	OP11
045	7oxa_A_U45_A46	AAA	AA00	80	0.18	AA00
046	7oxa_A_A46_A47	AAA	AA00	96	0.14	AA00
047	7oxa_A_A47_A48	AAA	AA00	66	0.31	AA00
048	7oxa_A_A48_A49	AAA	AA00	94	0.13	AA00
049	7oxa_A_A49_U50	AAA	AA00	74	0.23	AA00
050	7oxa_A_U50_A51	NAN	NANT	0	1.61	OP02
051	7oxa_A_A51_A52	NAN	NANT	0	0.91	OPS1
052	7oxa_A_A52_G53	NAN	NANT	0	0.64	AA05
053	7oxa_A_G53_G54	AAA	AA00	48	0.28	AA00
054	7oxa_A_G54_C55	A-B	AB05	78	0.26	AB05
055	7oxa_A_C55_U56	NAN	NANT	0	1.54	BB00
056	7oxa_A_U56_A57	NAN	NANT	0	0.52	IC06
057	7oxa_A_A57_G58	NAN	NANT	0	0.54	ZZ02
058	7oxa_A_G58_U59	NAN	NANT	0	1.00	OP17
059	7oxa_A_U59_C60	NAN	NANT	0	0.52	OP06
060	7oxa_A_C60_C61	AAA	AA00	93	0.16	AA00
061	7oxa_A_C61_G62	AAA	AA00	83	0.19	AA00
062	7oxa_A_G62_U63	NAN	NANT	0	0.85	IC02
063	7oxa_A_U63_U64	OPN	OP11	82	0.31	OP11
064	7oxa_A_U64_A65	AAA	AA08	67	0.39	AA08
065	7oxa_A_A65_U66	AAA	AA00	41	0.38	AA00
066	7oxa_A_U66_C67	AAA	AA00	17	0.48	AA00
067	7oxa_A_C67_A68	NAN	NANT	0	1.39	OP17
068	7oxa_A_A68_A69	AAA	AA08	76	0.29	AA08
069	7oxa_A_A69_C70	AAA	AA08	87	0.15	AA08
070	7oxa_A_C70_U71	AAA	AA00	70	0.16	AA00
071	7oxa_A_U71_U72	NAN	NANT	0	0.19	AA03
072	7oxa_A_U72_G73	AAA	AA00	53	0.36	AA00
073	7oxa_A_G73_A74	OPN	OP03	72	0.20	OP03
074	7oxa_A_A74_A75	AAA	AA04	66	0.40	AA04
075	7oxa_A_A75_A76	AAA	AA00	53	0.29	AA00
076	7oxa_A_A76_A77	AAA	AA04	22	0.72	AA04
077	7oxa_A_A77_A78	AAA	AA08	12	0.43	AA08
078	7oxa_A_A78_G79	AAA	AA00	85	0.13	AA00
079	7oxa_A_G79_U80	AAA	AA00	56	0.18	AA00
080	7oxa_A_U80_G81	A-B	AB05	21	0.66	AB05
081	7oxa_C_DC-7_DA-6	NAN	NANT	0	0.71	AA10
082	7oxa_C_DA-6_DA-5	NAN	NANT	0	1.05	BB12
083	7oxa_C_DA-5_DT-4	NAN	NANT	0	0.78	BB15
084	7oxa_C_DT-4_DA-3	BB2	BB07	32	0.26	BB07
085	7oxa_C_DA-3_DC-2	BBB	BB00	60	0.29	BB00
086	7oxa_C_DC-2_DC-1	BBB	BB01	56	0.15	BB01
087	7oxa_C_DC-1_DA0	BBB	BB00	28	0.36	BB00
088	7oxa_C_DA0_DA1	NAN	NANT	0	0.53	OP17
089	7oxa_C_DA1_DT2	AAA	AA00	64	0.41	AA00
090	7oxa_C_DT2_DC3	AAw	AA01	21	0.26	AA01
091	7oxa_C_DC3_DC4	AAA	AA00	71	0.32	AA00
092	7oxa_C_DC4_DT5	AAA	AA00	40	0.37	AA00
093	7oxa_C_DT5_DG6	AAA	AA00	94	0.17	AA00
094	7oxa_C_DG6_DT7	AAA	AA00	70	0.25	AA00
095	7oxa_C_DT7_DC8	AAA	AA04	80	0.25	AA04
096	7oxa_C_DC8_DC9	AAA	AA00	78	0.22	AA00
097	7oxa_C_DC9_DC10	AAA	AA00	89	0.23	AA00
098	7oxa_C_DC10_DT11	A-B	AB05	89	0.24	AB05
099	7oxa_C_DT11_DA12	BBB	BB00	70	0.27	BB00
100	7oxa_C_DA12_DG13	B12	BB04	54	0.21	BB04
101	7oxa_C_DG13_DT14	BBB	BB01	13	0.40	BB01
102	7oxa_C_DT14_DG15	A-B	AB03	56	0.44	AB03
103	7oxa_C_DG15_DG16	B-A	BA10	70	0.28	BA10
104	7oxa_C_DG16_DC17	NAN	NANT	0	0.38	AA01
105	7oxa_C_DC17_DC18	AAA	AA08	22	0.33	AA08
106	7oxa_C_DC18_DC19	AAw	AA01	87	0.17	AA01
107	7oxa_C_DC19_DC20	AAA	AA00	70	0.25	AA00
108	7oxa_D_DA-2_DT-1	BBB	BB00	71	0.32	BB00
109	7oxa_D_DT-1_DT0	BBB	BB00	65	0.31	BB00
110	7oxa_D_DT0_DG1	BB2	BB07	15	0.28	BB07
111	7oxa_D_DG1_DG2	BBB	BB00	57	0.33	BB00
112	7oxa_D_DG2_DT3	B-A	BA05	79	0.15	BA05
113	7oxa_D_DT3_DA4	BBB	BB01	13	0.41	BB01
114	7oxa_D_DA4_DT5	BBB	BB00	73	0.19	BB00
115	7oxa_D_DT5_DT6	B12	BB04	36	0.40	BB04
116	7oxa_D_DT6_DG7	NAN	NANT	0	0.32	BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 116 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible