DNATCO v4.1: results

Target-bound SpCas9 complex with AAVS1 all-RNA guide

Results of the assignment of 117 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7ox9_A_G0_G1	AAA	AA08	84	0.25	AA08
002	7ox9_A_G1_G2	AAA	AA00	83	0.19	AA00
003	7ox9_A_G2_G3	AAA	AA00	69	0.25	AA00
004	7ox9_A_G3_G4	AAA	AA00	87	0.19	AA00
005	7ox9_A_G4_C5	AAA	AA00	91	0.13	AA00
006	7ox9_A_C5_C6	AAA	AA00	80	0.20	AA00
007	7ox9_A_C6_A7	AAA	AA00	72	0.18	AA00
008	7ox9_A_A7_C8	AAw	AA10	83	0.19	AA10
009	7ox9_A_C8_U9	AAA	AA08	89	0.19	AA08
010	7ox9_A_U9_A10	AAA	AA00	96	0.12	AA00
011	7ox9_A_A10_G11	AAA	AA04	84	0.20	AA04
012	7ox9_A_G11_G12	AAA	AA00	80	0.17	AA00
013	7ox9_A_G12_G13	AAA	AA00	82	0.22	AA00
014	7ox9_A_G13_A14	AAA	AA00	85	0.17	AA00
015	7ox9_A_A14_C15	AAA	AA00	76	0.19	AA00
016	7ox9_A_C15_A16	AAA	AA00	93	0.14	AA00
017	7ox9_A_A16_G17	AAw	AA01	66	0.16	AA01
018	7ox9_A_G17_G18	AAA	AA00	45	0.30	AA00
019	7ox9_A_G18_A19	AAA	AA00	87	0.16	AA00
020	7ox9_A_A19_U20	AAw	AA10	95	0.09	AA10
021	7ox9_A_U20_G21	AAA	AA00	43	0.45	AA00
022	7ox9_A_G21_U22	AAA	AA08	91	0.14	AA08
023	7ox9_A_U22_U23	AAA	AA08	96	0.16	AA08
024	7ox9_A_U23_U24	AAA	AA08	55	0.39	AA08
025	7ox9_A_U24_U25	AAA	AA00	86	0.18	AA00
026	7ox9_A_U25_A26	AAA	AA00	78	0.20	AA00
027	7ox9_A_A26_G27	AAA	AA00	86	0.17	AA00
028	7ox9_A_G27_A28	NAN	NANT	0	1.59	OP28
029	7ox9_A_A28_G29	NAN	NANT	0	1.75	OP14
030	7ox9_A_G29_C30	AAA	AA00	74	0.20	AA00
031	7ox9_A_C30_U31	AAA	AA00	94	0.13	AA00
032	7ox9_A_U31_A32	AAA	AA00	54	0.20	AA00
033	7ox9_A_A32_G33	AAw	AA01	56	0.29	AA01
034	7ox9_A_G33_A34	NAN	NANT	0	0.50	OP03
035	7ox9_A_A34_A35	AAw	AA05	32	0.47	AA05
036	7ox9_A_A35_A36	AAA	AA08	8	0.41	AA08
037	7ox9_A_A36_U37	NAN	NANT	0	0.77	AA08
038	7ox9_A_U37_A38	AAA	AA00	95	0.10	AA00
039	7ox9_A_A38_G39	AAA	AA00	94	0.11	AA00
040	7ox9_A_G39_C40	AAA	AA00	32	0.23	AA00
041	7ox9_A_C40_A41	AAA	AA00	81	0.17	AA00
042	7ox9_A_A41_A42	AAA	AA00	76	0.35	AA00
043	7ox9_A_A42_G43	A-B	AB05	75	0.29	AB05
044	7ox9_A_G43_U44	OPN	OP20	23	0.67	OP20
045	7ox9_A_U44_U45	OPN	OP11	47	0.55	OP11
046	7ox9_A_U45_A46	AAA	AA00	78	0.21	AA00
047	7ox9_A_A46_A47	AAA	AA00	84	0.15	AA00
048	7ox9_A_A47_A48	AAA	AA08	81	0.22	AA08
049	7ox9_A_A48_A49	AAA	AA00	85	0.16	AA00
050	7ox9_A_A49_U50	AAA	AA08	76	0.19	AA08
051	7ox9_A_U50_A51	NAN	NANT	0	1.61	OP02
052	7ox9_A_A51_A52	NAN	NANT	0	0.92	OPS1
053	7ox9_A_A52_G53	AAw	AA05	8	0.56	AA05
054	7ox9_A_G53_G54	AAA	AA00	55	0.28	AA00
055	7ox9_A_G54_C55	A-B	AB05	73	0.26	AB05
056	7ox9_A_C55_U56	NAN	NANT	0	1.53	BB00
057	7ox9_A_U56_A57	NAN	NANT	0	0.57	IC06
058	7ox9_A_A57_G58	NAN	NANT	0	0.54	ZZ02
059	7ox9_A_G58_U59	NAN	NANT	0	1.02	OP17
060	7ox9_A_U59_C60	NAN	NANT	0	0.54	OP06
061	7ox9_A_C60_C61	AAA	AA00	95	0.15	AA00
062	7ox9_A_C61_G62	AAA	AA00	80	0.21	AA00
063	7ox9_A_G62_U63	NAN	NANT	0	0.88	IC02
064	7ox9_A_U63_U64	OPN	OP11	69	0.34	OP11
065	7ox9_A_U64_A65	AAA	AA08	72	0.38	AA08
066	7ox9_A_A65_U66	AAA	AA08	67	0.31	AA08
067	7ox9_A_U66_C67	AAA	AA00	13	0.48	AA00
068	7ox9_A_C67_A68	NAN	NANT	0	1.41	OP17
069	7ox9_A_A68_A69	AAA	AA08	60	0.30	AA08
070	7ox9_A_A69_C70	AAA	AA08	85	0.17	AA08
071	7ox9_A_C70_U71	AAA	AA08	78	0.20	AA08
072	7ox9_A_U71_U72	AAA	AA03	24	0.22	AA03
073	7ox9_A_U72_G73	NAN	NANT	0	0.64	AA06
074	7ox9_A_G73_A74	NAN	NANT	0	0.45	OP03
075	7ox9_A_A74_A75	NAN	NANT	0	0.75	AA10
076	7ox9_A_A75_A76	AAA	AA08	61	0.45	AA08
077	7ox9_A_A76_A77	NAN	NANT	0	0.60	AA10
078	7ox9_A_A77_A78	AAA	AA08	39	0.43	AA08
079	7ox9_A_A78_G79	AAA	AA08	90	0.25	AA08
080	7ox9_A_G79_U80	AAA	AA00	63	0.27	AA00
081	7ox9_A_U80_G81	NAN	NANT	0	0.56	AB05
082	7ox9_C_DC-7_DA-6	NAN	NANT	0	0.73	AA11
083	7ox9_C_DA-6_DA-5	NAN	NANT	0	0.96	AB02
084	7ox9_C_DA-5_DT-4	A-B	AB02	65	0.43	AB02
085	7ox9_C_DT-4_DA-3	BB2	BB07	24	0.30	BB07
086	7ox9_C_DA-3_DC-2	BBB	BB01	72	0.23	BB01
087	7ox9_C_DC-2_DC-1	BBB	BB01	47	0.17	BB01
088	7ox9_C_DC-1_DA0	A-B	AB03	81	0.23	AB03
089	7ox9_C_DA0_DA1	NAN	NANT	0	0.54	OP17
090	7ox9_C_DA1_DT2	AAA	AA00	74	0.36	AA00
091	7ox9_C_DT2_DC3	AAA	AA00	60	0.29	AA00
092	7ox9_C_DC3_DC4	AAA	AA00	86	0.32	AA00
093	7ox9_C_DC4_DT5	AAA	AA00	43	0.36	AA00
094	7ox9_C_DT5_DG6	AAA	AA00	88	0.16	AA00
095	7ox9_C_DG6_DT7	AAA	AA00	78	0.23	AA00
096	7ox9_C_DT7_DC8	AAA	AA00	75	0.28	AA00
097	7ox9_C_DC8_DC9	AAA	AA00	81	0.24	AA00
098	7ox9_C_DC9_DC10	AAA	AA00	95	0.20	AA00
099	7ox9_C_DC10_DT11	A-B	AB05	19	0.26	AB05
100	7ox9_C_DT11_DA12	BBB	BB01	55	0.32	BB01
101	7ox9_C_DA12_DG13	B-A	BA08	31	0.44	BA08
102	7ox9_C_DG13_DT14	AAA	AA00	81	0.22	AA00
103	7ox9_C_DT14_DG15	AAA	AA00	88	0.15	AA00
104	7ox9_C_DG15_DG16	AAA	AA00	66	0.20	AA00
105	7ox9_C_DG16_DC17	AAA	AA00	28	0.35	AA00
106	7ox9_C_DC17_DC18	AAA	AA00	90	0.23	AA00
107	7ox9_C_DC18_DC19	AAw	AA10	85	0.18	AA10
108	7ox9_C_DC19_DC20	AAA	AA00	59	0.24	AA00
109	7ox9_D_DA-2_DT-1	BBw	BB02	49	0.25	BB02
110	7ox9_D_DT-1_DT0	BBB	BB00	32	0.48	BB00
111	7ox9_D_DT0_DG1	BB2	BB07	42	0.22	BB07
112	7ox9_D_DG1_DG2	BBB	BB00	70	0.34	BB00
113	7ox9_D_DG2_DT3	B-A	BA05	78	0.11	BA05
114	7ox9_D_DT3_DA4	BBB	BB01	34	0.36	BB01
115	7ox9_D_DA4_DT5	BBB	BB00	66	0.16	BB00
116	7ox9_D_DT5_DT6	BBB	BB01	41	0.20	BB01
117	7ox9_D_DT6_DG7	BBB	BB01	49	0.26	BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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B-A

B

IC

OPN

Z

N

Results of the assignment of 117 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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