DNATCO v4.1: results

Target-bound SpCas9 complex with TRAC full RNA guide

Results of the assignment of 117 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7ox8_A_G0_A1	AAA	AA00	46	0.34	AA00
002	7ox8_A_A1_G2	AAw	AA10	47	0.23	AA10
003	7ox8_A_G2_A3	AAA	AA08	36	0.31	AA08
004	7ox8_A_A3_G4	AAA	AA00	75	0.17	AA00
005	7ox8_A_G4_U5	AAA	AA00	80	0.14	AA00
006	7ox8_A_U5_C6	AAA	AA00	85	0.11	AA00
007	7ox8_A_C6_U7	AAA	AA08	85	0.16	AA08
008	7ox8_A_U7_C8	NAN	NANT	0	0.34	AA10
009	7ox8_A_C8_U9	AAA	AA00	82	0.27	AA00
010	7ox8_A_U9_C10	AAA	AA00	29	0.22	AA00
011	7ox8_A_C10_A11	AAA	AA00	60	0.26	AA00
012	7ox8_A_A11_G12	AAA	AA08	86	0.18	AA08
013	7ox8_A_G12_C13	AAA	AA08	89	0.13	AA08
014	7ox8_A_C13_U14	AAA	AA00	79	0.20	AA00
015	7ox8_A_U14_G15	AAA	AA00	66	0.16	AA00
016	7ox8_A_G15_G16	AAA	AA00	85	0.18	AA00
017	7ox8_A_G16_U17	AAw	AA10	92	0.15	AA10
018	7ox8_A_U17_A18	AAA	AA08	75	0.26	AA08
019	7ox8_A_A18_C19	AAA	AA00	89	0.17	AA00
020	7ox8_A_C19_A20	AAw	AA10	72	0.20	AA10
021	7ox8_A_A20_G21	AAA	AA08	81	0.35	AA08
022	7ox8_A_G21_U22	AAA	AA00	74	0.24	AA00
023	7ox8_A_U22_U23	AAA	AA08	92	0.18	AA08
024	7ox8_A_U23_U24	AAA	AA08	19	0.44	AA08
025	7ox8_A_U24_U25	AAA	AA00	82	0.17	AA00
026	7ox8_A_U25_A26	AAA	AA00	63	0.15	AA00
027	7ox8_A_A26_G27	NAN	NANT	0	0.28	AA06
028	7ox8_A_G27_A28	NAN	NANT	0	1.48	OP28
029	7ox8_A_A28_G29	NAN	NANT	0	1.74	OP14
030	7ox8_A_G29_C30	AAA	AA00	71	0.23	AA00
031	7ox8_A_C30_U31	AAA	AA00	95	0.18	AA00
032	7ox8_A_U31_A32	AAA	AA00	46	0.20	AA00
033	7ox8_A_A32_G33	AAw	AA11	70	0.33	AA11
034	7ox8_A_G33_A34	NAN	NANT	0	0.59	OP03
035	7ox8_A_A34_A35	NAN	NANT	0	0.58	AA05
036	7ox8_A_A35_A36	AAA	AA08	48	0.44	AA08
037	7ox8_A_A36_U37	NAN	NANT	0	0.84	AA08
038	7ox8_A_U37_A38	AAA	AA04	89	0.24	AA04
039	7ox8_A_A38_G39	AAA	AA00	87	0.11	AA00
040	7ox8_A_G39_C40	AAA	AA00	35	0.27	AA00
041	7ox8_A_C40_A41	AAA	AA00	75	0.17	AA00
042	7ox8_A_A41_A42	AAA	AA00	38	0.40	AA00
043	7ox8_A_A42_G43	A-B	AB05	64	0.31	AB05
044	7ox8_A_G43_U44	OPN	OP20	20	0.68	OP20
045	7ox8_A_U44_U45	OPN	OP11	39	0.59	OP11
046	7ox8_A_U45_A46	AAA	AA00	76	0.20	AA00
047	7ox8_A_A46_A47	AAA	AA00	98	0.12	AA00
048	7ox8_A_A47_A48	AAA	AA00	66	0.32	AA00
049	7ox8_A_A48_A49	AAA	AA00	85	0.15	AA00
050	7ox8_A_A49_U50	AAA	AA00	46	0.28	AA00
051	7ox8_A_U50_A51	NAN	NANT	0	1.64	OP02
052	7ox8_A_A51_A52	NAN	NANT	0	0.88	OPS1
053	7ox8_A_A52_G53	AAw	AA05	4	0.56	AA05
054	7ox8_A_G53_G54	AAA	AA00	63	0.25	AA00
055	7ox8_A_G54_C55	A-B	AB05	52	0.31	AB05
056	7ox8_A_C55_U56	NAN	NANT	0	1.52	BB00
057	7ox8_A_U56_A57	NAN	NANT	0	0.57	IC06
058	7ox8_A_A57_G58	NAN	NANT	0	0.52	ZZ02
059	7ox8_A_G58_U59	NAN	NANT	0	0.98	OP17
060	7ox8_A_U59_C60	OPN	OP06	32	0.53	OP06
061	7ox8_A_C60_C61	AAA	AA00	81	0.18	AA00
062	7ox8_A_C61_G62	AAA	AA00	54	0.17	AA00
063	7ox8_A_G62_U63	NAN	NANT	0	0.92	OP07
064	7ox8_A_U63_U64	OPN	OP11	86	0.29	OP11
065	7ox8_A_U64_A65	AAA	AA00	51	0.38	AA00
066	7ox8_A_A65_U66	AAA	AA00	46	0.39	AA00
067	7ox8_A_U66_C67	AAA	AA00	33	0.45	AA00
068	7ox8_A_C67_A68	NAN	NANT	0	1.38	OP17
069	7ox8_A_A68_A69	AAA	AA08	73	0.31	AA08
070	7ox8_A_A69_C70	AAA	AA00	64	0.16	AA00
071	7ox8_A_C70_U71	AAA	AA00	75	0.20	AA00
072	7ox8_A_U71_U72	AAA	AA03	82	0.18	AA03
073	7ox8_A_U72_G73	AAw	AA05	23	0.48	AA05
074	7ox8_A_G73_A74	NAN	NANT	0	2.56	OP11
075	7ox8_A_A74_A75	NAN	NANT	0	0.63	AA06
076	7ox8_A_A75_A76	AAA	AA00	46	0.28	AA00
077	7ox8_A_A76_A77	NAN	NANT	0	0.71	AA10
078	7ox8_A_A77_A78	AAA	AA08	76	0.32	AA08
079	7ox8_A_A78_G79	AAA	AA08	81	0.22	AA08
080	7ox8_A_G79_U80	AAA	AA00	64	0.28	AA00
081	7ox8_A_U80_G81	A-B	AB05	25	0.64	AB05
082	7ox8_C_DC-7_DA-6	NAN	NANT	0	0.75	AA10
083	7ox8_C_DA-6_DA-5	NAN	NANT	0	0.94	BB08
084	7ox8_C_DA-5_DT-4	NAN	NANT	0	0.57	BB15
085	7ox8_C_DT-4_DA-3	B-A	BA05	28	0.40	BA05
086	7ox8_C_DA-3_DC-2	BBB	BB01	53	0.24	BB01
087	7ox8_C_DC-2_DC-1	BBB	BB00	33	0.25	BB00
088	7ox8_C_DC-1_DG0	BBB	BB00	51	0.35	BB00
089	7ox8_C_DG0_DT1	NAN	NANT	0	0.59	OP17
090	7ox8_C_DT1_DG2	AAA	AA00	69	0.37	AA00
091	7ox8_C_DG2_DT3	AAA	AA00	76	0.27	AA00
092	7ox8_C_DT3_DA4	AAA	AA00	95	0.27	AA00
093	7ox8_C_DA4_DC5	AAA	AA00	87	0.30	AA00
094	7ox8_C_DC5_DC6	AAA	AA00	91	0.24	AA00
095	7ox8_C_DC6_DA7	AAA	AA00	82	0.21	AA00
096	7ox8_C_DA7_DG8	AAA	AA00	32	0.29	AA00
097	7ox8_C_DG8_DC9	AAA	AA08	73	0.25	AA08
098	7ox8_C_DC9_DT10	AAA	AA00	89	0.18	AA00
099	7ox8_C_DT10_DG11	A-B	AB04	24	0.45	AB04
100	7ox8_C_DG11_DA12	BBB	BB00	25	0.32	BB00
101	7ox8_C_DA12_DG13	B12	BB04	30	0.36	BB04
102	7ox8_C_DG13_DA14	BBB	BB00	14	0.37	BB00
103	7ox8_C_DA14_DG15	NAN	NANT	0	0.36	BA08
104	7ox8_C_DG15_DA16	AAA	AA00	93	0.19	AA00
105	7ox8_C_DA16_DC17	AAA	AA00	48	0.30	AA00
106	7ox8_C_DC17_DT18	AAA	AA00	81	0.22	AA00
107	7ox8_C_DT18_DC19	AAw	AA10	78	0.24	AA10
108	7ox8_C_DC19_DT20	AAA	AA00	25	0.35	AA00
109	7ox8_D_DC-2_DA-1	NAN	NANT	0	0.87	BB02
110	7ox8_D_DA-1_DC0	BBB	BB00	10	0.46	BB00
111	7ox8_D_DC0_DG1	BB2	BB07	19	0.29	BB07
112	7ox8_D_DG1_DG2	BBB	BB00	44	0.27	BB00
113	7ox8_D_DG2_DT3	B-A	BA05	73	0.07	BA05
114	7ox8_D_DT3_DA4	A-B	AB01	69	0.27	AB01
115	7ox8_D_DA4_DT5	miB	BB15	95	0.14	BB15
116	7ox8_D_DT5_DT6	BBB	BB00	77	0.14	BB00
117	7ox8_D_DT6_DG7	miB	BB15	42	0.33	BB15

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

IC

OPN

Z

N

Results of the assignment of 117 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible