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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of RNA duplex [UCGUGCGA]2 in complex with Ba2+ cation

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017ouo_AAA_U1_C2AAAAA00880.15 AA00
027ouo_AAA_C2_G3AAAAA00880.12 AA00
037ouo_AAA_G3_U4AAAAA00780.17 AA00
047ouo_AAA_U4_G5AAAAA00580.26 AA00
057ouo_AAA_G5_C6AAAAA00710.14 AA00
067ouo_AAA_C6_G7AAAAA00810.17 AA00
077ouo_AAA_G7_A8NANNANT00.29 AA04
087ouo_BBB_U1_C2AAAAA00820.18 AA00
097ouo_BBB_C2_G3AAAAA00940.08 AA00
107ouo_BBB_G3_U4AAAAA00840.19 AA00
117ouo_BBB_U4_G5AAuAA12840.19 AA12
127ouo_BBB_G5_C6AAAAA00840.20 AA00
137ouo_BBB_C6_G7AAAAA00900.15 AA00
147ouo_BBB_G7_A8AAAAA00590.24 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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