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Conformers: ABBIImiBZICOPNSYNN
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Thosea asigna virus RdRP domain elongation complex

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017oma_E_A3_A4AAAAA00680.22 AA00
027oma_E_A4_A5AAAAA00630.21 AA00
037oma_E_A5_U6AAAAA08890.20 AA08
047oma_E_U6_U7AAAAA08820.19 AA08
057oma_E_U7_U8AAAAA00680.21 AA00
067oma_E_U8_U9AAAAA08660.26 AA08
077oma_F_C1_A2NANNANT00.84 OP26
087oma_F_A2_A3AAAAA00800.18 AA00
097oma_F_A3_A4NANNANT00.49 AA06
107oma_F_A4_A5AAAAA08550.28 AA08
117oma_F_A5_U6AAAAA00750.11 AA00
127oma_F_U6_U7AAAAA00770.24 AA00
137oma_F_U7_U8AAAAA03870.21 AA03
147oma_G_A3_A4AAAAA00680.27 AA00
157oma_G_A4_A5AAAAA08780.25 AA08
167oma_G_A5_U6AAAAA08840.17 AA08
177oma_G_U6_U7AAAAA00570.21 AA00
187oma_G_U7_U8AAuAA12610.34 AA12
197oma_G_U8_U9AAAAA08670.24 AA08
207oma_H_C1_A2NANNANT00.99 ZZS1
217oma_H_A2_A3AAAAA00840.16 AA00
227oma_H_A3_A4NANNANT00.59 AA11
237oma_H_A4_A5AAAAA04580.36 AA04
247oma_H_A5_U6AAAAA08830.12 AA08
257oma_H_U6_U7AAAAA00770.23 AA00
267oma_H_U7_U8AAAAA03830.25 AA03
277oma_I_A3_A4AAAAA00710.24 AA00
287oma_I_A4_A5AAAAA08790.23 AA08
297oma_I_A5_U6AAAAA08920.10 AA08
307oma_I_U6_U7AAAAA00600.16 AA00
317oma_I_U7_U8AAAAA00670.18 AA00
327oma_I_U8_U9AAAAA08660.25 AA08
337oma_J_C1_A2NANNANT01.10 ZZS1
347oma_J_A2_A3AAAAA00830.21 AA00
357oma_J_A3_A4AAwAA06280.47 AA06
367oma_J_A4_A5AAAAA08610.26 AA08
377oma_J_A5_U6AAAAA08830.12 AA08
387oma_J_U6_U7AAAAA00790.23 AA00
397oma_J_U7_U8AAAAA03900.12 AA03
407oma_L_A3_A4AAAAA00540.28 AA00
417oma_L_A4_A5AAAAA08720.32 AA08
427oma_L_A5_U6AAAAA08730.22 AA08
437oma_L_U6_U7AAAAA00860.13 AA00
447oma_L_U7_U8AAAAA00400.33 AA00
457oma_L_U8_U9AAAAA08680.23 AA08
467oma_K_C1_A2NANNANT01.00 ZZS1
477oma_K_A2_A3AAAAA00870.14 AA00
487oma_K_A3_A4AAwAA06140.45 AA06
497oma_K_A4_A5AAAAA08830.24 AA08
507oma_K_A5_U6AAAAA08860.11 AA08
517oma_K_U6_U7AAAAA00780.18 AA00
527oma_K_U7_U8AAAAA03920.14 AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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