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Conformers: ABBIImiBZICOPNSYNN
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Thosea asigna virus RdRP domain in complex with RNA

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017om6_C_A3_A4AAAAA00780.18 AA00
027om6_C_A4_A5AAAAA00610.26 AA00
037om6_C_A5_U6AAAAA00890.11 AA00
047om6_C_U6_U7AAAAA00850.23 AA00
057om6_C_U7_U8A-BAB05920.21 AB05
067om6_D_A3_A4AAAAA00710.15 AA00
077om6_D_A4_A5AAAAA00520.29 AA00
087om6_D_A5_U6AAAAA00900.12 AA00
097om6_D_U6_U7AAAAA00800.26 AA00
107om6_D_U7_U8A-BAB05250.20 AB05
117om6_E_C1_A2NANNANT01.12 ZZS1
127om6_E_A2_A3AAAAA00630.21 AA00
137om6_E_A3_A4AAwAA06210.51 AA06
147om6_E_A4_A5AAAAA08510.33 AA08
157om6_E_A5_U6AAAAA00860.10 AA00
167om6_E_U6_U7AAAAA00780.24 AA00
177om6_E_U7_U8AAAAA00790.20 AA00
187om6_F_C1_A2NANNANT00.69 OP26
197om6_F_A2_A3AAAAA00480.20 AA00
207om6_F_A3_A4AAwAA01180.27 AA01
217om6_F_A4_A5AAAAA08570.32 AA08
227om6_F_A5_U6AAAAA00860.10 AA00
237om6_F_U6_U7AAAAA00860.21 AA00
247om6_F_U7_U8AAAAA00910.19 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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