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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium hexammine co-crystallized form)

Results of the assignment of 95 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017oa3_A_G2_C3AAwAA10900.23 AA10
027oa3_A_C3_U4AAAAA04640.47 AA04
037oa3_A_U4_A5AAAAA08860.16 AA08
047oa3_A_A5_G6AAAAA08680.31 AA08
057oa3_A_G6_C7AAAAA00740.18 AA00
067oa3_A_C7_U8AAAAA00900.17 AA00
077oa3_A_U8_G9NANNANT00.65 IC04
087oa3_A_G9_G10NANNANT01.35 ZZ2S
097oa3_A_G10_A11NANNANT00.88 IC07
107oa3_A_A11_G12AAAAA08730.27 AA08
117oa3_A_G12_G13ZZZZZ01820.13 ZZ01
127oa3_A_G13_G14NANNANT01.31 OP24
137oa3_A_G14_G15NANNANT00.91 OP10
147oa3_A_G15_C16AAAAA08910.17 AA08
157oa3_A_C16_G17AAAAA00290.44 AA00
167oa3_A_G17_C18AAAAA08950.21 AA08
177oa3_A_C18_C19AAAAA08940.13 AA08
187oa3_A_C19_A20AAAAA00670.19 AA00
197oa3_A_A20_G21AAwAA10890.15 AA10
207oa3_A_G21_U22AAAAA08800.37 AA08
217oa3_A_U22_U23NANNANT01.60 OP29
227oa3_A_U23_C24NANNANT01.59 IC04
237oa3_A_C24_G25NANNANT00.54 ZZ1S
247oa3_A_G25_C26NANNANT00.76 AAS1
257oa3_A_C26_U27AAAAA00840.19 AA00
267oa3_A_U27_G28AAAAA00860.14 AA00
277oa3_A_G28_G29AAAAA00890.19 AA00
287oa3_A_G29_U30AAAAA00780.27 AA00
297oa3_A_U30_G31ZZZZZ01910.14 ZZ01
307oa3_A_G31_G32NANNANT01.11 OP27
317oa3_A_G32_U33NANNANT00.92 OP25
327oa3_A_U33_U34NANNANT01.76 OP17
337oa3_A_G36_G37ZZZZZ01620.34 ZZ01
347oa3_A_G37_U38NANNANT00.79 OP18
357oa3_A_U38_G39NANNANT00.67 OP21
367oa3_A_G39_C40AAAAA00770.22 AA00
377oa3_A_C40_G41AAAAA00920.19 AA00
387oa3_A_G41_G42ZZZZZ01720.17 ZZ01
397oa3_A_G42_U43OPNOP18560.40 OP18
407oa3_A_U43_C44NANNANT00.89 OP17
417oa3_A_C44_G45AAAAA08830.15 AA08
427oa3_A_G45_G46AAAAA00690.26 AA00
437oa3_A_G46_C47AAAAA00790.22 AA00
447oa3_A_C47_U48AAAAA00950.11 AA00
457oa3_A_U48_A49AAAAA08930.20 AA08
467oa3_A_A49_G50AAAAA00920.09 AA00
477oa3_A_G50_C51AAAAA00930.10 AA00
487oa3_A_C51_C52AAAAA00960.15 AA00
497oa3_B_G2_C3AAwAA10850.29 AA10
507oa3_B_C3_U4AAAAA04570.59 AA04
517oa3_B_U4_A5AAAAA08840.18 AA08
527oa3_B_A5_G6AAAAA08640.35 AA08
537oa3_B_G6_C7AAAAA00660.22 AA00
547oa3_B_C7_U8AAAAA00890.17 AA00
557oa3_B_U8_G9NANNANT00.65 IC04
567oa3_B_G9_G10NANNANT01.37 ZZ2S
577oa3_B_G10_A11NANNANT00.88 IC07
587oa3_B_A11_G12AAAAA08730.27 AA08
597oa3_B_G12_G13ZZZZZ01820.13 ZZ01
607oa3_B_G13_G14NANNANT01.31 OP24
617oa3_B_G14_G15NANNANT00.92 OP10
627oa3_B_G15_C16AAAAA08910.18 AA08
637oa3_B_C16_G17AAAAA00260.45 AA00
647oa3_B_G17_C18AAAAA08940.22 AA08
657oa3_B_C18_C19AAAAA08910.16 AA08
667oa3_B_C19_A20AAAAA00660.20 AA00
677oa3_B_A20_G21AAwAA10890.14 AA10
687oa3_B_G21_U22AAAAA08830.34 AA08
697oa3_B_U22_U23NANNANT01.59 OP29
707oa3_B_U23_C24NANNANT01.59 IC04
717oa3_B_C24_G25NANNANT00.53 ZZ1S
727oa3_B_G25_C26NANNANT00.74 AAS1
737oa3_B_C26_U27AAAAA00820.20 AA00
747oa3_B_U27_G28AAAAA00840.16 AA00
757oa3_B_G28_G29AAAAA00860.22 AA00
767oa3_B_G29_U30AAAAA00770.27 AA00
777oa3_B_U30_G31ZZZZZ01880.18 ZZ01
787oa3_B_G31_G32NANNANT01.13 OP27
797oa3_B_G32_U33NANNANT00.96 OP25
807oa3_B_G36_G37ZZZZZ01740.23 ZZ01
817oa3_B_G37_U38NANNANT00.73 OP18
827oa3_B_U38_G39NANNANT00.83 OP21
837oa3_B_G39_C40AAAAA00910.12 AA00
847oa3_B_C40_G41AAAAA00930.17 AA00
857oa3_B_G41_G42ZZZZZ01800.15 ZZ01
867oa3_B_G42_U43OPNOP18540.44 OP18
877oa3_B_U43_C44NANNANT00.88 OP17
887oa3_B_C44_G45AAAAA08810.15 AA08
897oa3_B_G45_G46AAAAA00680.26 AA00
907oa3_B_G46_C47AAAAA00860.20 AA00
917oa3_B_C47_U48AAAAA00930.12 AA00
927oa3_B_U48_A49AAAAA08920.22 AA08
937oa3_B_A49_G50AAAAA00920.09 AA00
947oa3_B_G50_C51AAAAA00890.14 AA00
957oa3_B_C51_C52AAAAA00960.15 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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