Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the foamy viral protease-reverse transcriptase in complex with RNA/DNA hybrid.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7o0g_E_U1_U2 | NAN | NANT | 0 | 0.74 |
| 02 | 7o0g_E_U2_C3 | SYN | AAS1 | 94 | 0.19 |
| 03 | 7o0g_E_C3_U4 | AAA | AA00 | 91 | 0.16 |
| 04 | 7o0g_E_U4_U5 | AAA | AA08 | 90 | 0.14 |
| 05 | 7o0g_E_U5_G6 | AAA | AA00 | 87 | 0.23 |
| 06 | 7o0g_E_G6_U7 | AAA | AA00 | 82 | 0.20 |
| 07 | 7o0g_E_U7_C8 | AAw | AA01 | 88 | 0.12 |
| 08 | 7o0g_E_C8_C9 | AAA | AA00 | 79 | 0.25 |
| 09 | 7o0g_E_C9_A10 | AAA | AA00 | 77 | 0.17 |
| 10 | 7o0g_E_A10_G11 | AAA | AA08 | 80 | 0.25 |
| 11 | 7o0g_E_G11_G12 | AAA | AA08 | 94 | 0.18 |
| 12 | 7o0g_E_G12_A13 | AAA | AA08 | 87 | 0.21 |
| 13 | 7o0g_E_A13_G14 | AAw | AA11 | 87 | 0.26 |
| 14 | 7o0g_E_G14_A15 | AAA | AA08 | 87 | 0.20 |
| 15 | 7o0g_E_A15_G16 | AAA | AA00 | 87 | 0.15 |
| 16 | 7o0g_E_G16_G17 | AAA | AA00 | 49 | 0.30 |
| 17 | 7o0g_F_DC1_DC2 | B-A | BA10 | 26 | 0.50 |
| 18 | 7o0g_F_DC2_DT3 | A-B | AB04 | 69 | 0.28 |
| 19 | 7o0g_F_DT3_DC4 | BBB | BB01 | 87 | 0.12 |
| 20 | 7o0g_F_DC4_DT.A5 | BBB | BB00 | 25 | 0.35 |
| 21 | 7o0g_F_DC4_DT.B5 | BBB | BB01 | 59 | 0.23 |
| 22 | 7o0g_F_DT.A5_DC.A6 | BBB | BB00 | 46 | 0.38 |
| 23 | 7o0g_F_DT.B5_DC.B6 | NAN | NANT | 0 | 0.55 |
| 24 | 7o0g_F_DC.A6_DC7 | NAN | NANT | 0 | 0.48 |
| 25 | 7o0g_F_DC.B6_DC7 | NAN | NANT | 0 | 0.56 |
| 26 | 7o0g_F_DC7_DT8 | AAA | AA00 | 94 | 0.14 |
| 27 | 7o0g_F_DT8_DG9 | AAA | AA00 | 80 | 0.14 |
| 28 | 7o0g_F_DG9_DG10 | AAw | AA10 | 58 | 0.23 |
| 29 | 7o0g_F_DG10_DA11 | AAA | AA00 | 47 | 0.30 |
| 30 | 7o0g_F_DA11_DC12 | AAA | AA00 | 95 | 0.17 |
| 31 | 7o0g_F_DC12_DA13 | AAA | AA00 | 77 | 0.20 |
| 32 | 7o0g_F_DA13_DA14 | A-B | AB05 | 47 | 0.22 |
| 33 | 7o0g_F_DA14_DG15 | NAN | NANT | 0 | 0.38 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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