Conformers:
ABBIImiBZICOPNSYNN
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Human tRNA guanine transglycosylase (TGT), RNA-bound covalent intermediate
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7nq4_C_A25_G26 | NAN | NANT | 0 | 0.73 |
| 02 | 7nq4_C_G26_C27 | AAA | AA08 | 72 | 0.21 |
| 03 | 7nq4_C_C27_A28 | AAA | AA08 | 77 | 0.19 |
| 04 | 7nq4_C_A28_C29 | AAw | AA06 | 91 | 0.12 |
| 05 | 7nq4_C_C29_G30 | AAA | AA08 | 90 | 0.21 |
| 06 | 7nq4_C_G30_G31 | AAA | AA08 | 48 | 0.24 |
| 07 | 7nq4_C_G31_C32 | NAN | NANT | 0 | 0.65 |
| 08 | 7nq4_C_C32_U33 | NAN | NANT | 0 | 0.59 |
| 09 | 7nq4_C_U35_A36 | NAN | NANT | 0 | 1.42 |
| 10 | 7nq4_C_A36_A37 | NAN | NANT | 0 | 0.60 |
| 11 | 7nq4_C_A37_A38 | NAN | NANT | 0 | 0.55 |
| 12 | 7nq4_C_A38_C39 | OPN | OP01 | 54 | 0.74 |
| 13 | 7nq4_C_C39_C40 | AAA | AA08 | 79 | 0.19 |
| 14 | 7nq4_C_C40_G41 | AAw | AA06 | 52 | 0.17 |
| 15 | 7nq4_C_G41_U42 | AAA | AA08 | 62 | 0.28 |
| 16 | 7nq4_C_U42_G43 | AAw | AA06 | 70 | 0.18 |
| 17 | 7nq4_C_G43_C44 | AAA | AA08 | 30 | 0.36 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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