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Conformers: ABBIImiBZICOPNSYNN
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ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing GGACCC (Oligo 21)

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017n5u_X_DC1_DA2NANNANT00.53 BB13
027n5u_X_DA2_DA3NANNANT00.48 BB03
037n5u_X_DA3_DA4BBBBB00240.28 BB00
047n5u_X_DA4_DC5BBBBB00380.18 BB00
057n5u_X_DC5_DA6BBBBB00160.23 BB00
067n5u_X_DA6_DT7B12BB04430.31 BB04
077n5u_X_DT7_DC8BBBBB00750.24 BB00
087n5u_X_DC8_DA9B12BB04380.24 BB04
097n5u_X_DA9_DA10BBBBB00680.29 BB00
107n5u_X_DA10_DG11BBwBB02720.28 BB02
117n5u_X_DG11_DG12B-ABA05590.35 BA05
127n5u_X_DG12_DG13BBBBB00470.26 BB00
137n5u_X_DG13_DT14BBBBB01130.37 BB01
147n5u_X_DT14_DC15BBBBB01100.35 BB01
157n5u_X_DC15_DC16NANNANT00.33 BB10
167n5u_Y_DG1_DG2BBBBB00510.27 BB00
177n5u_Y_DG2_DG3BBwBB02670.26 BB02
187n5u_Y_DG3_DA4BBBBB00270.38 BB00
197n5u_Y_DA4_DC5NANNANT00.31 BA08
207n5u_Y_DC5_DC6BBBBB00370.34 BB00
217n5u_Y_DC6_DC7BBBBB00940.09 BB00
227n5u_Y_DC7_DT8BBBBB00860.18 BB00
237n5u_Y_DT8_DT9BBBBB01880.13 BB01
247n5u_Y_DT9_DG10BBBBB00810.13 BB00
257n5u_Y_DG10_DA11B12BB04920.15 BB04
267n5u_Y_DA11_DT12miBBB15360.24 BB15
277n5u_Y_DT12_DG13BBBBB00740.23 BB00
287n5u_Y_DG13_DT14BBBBB00560.29 BB00
297n5u_Y_DT14_DT15BBBBB01630.17 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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