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Conformers: ABBIImiBZICOPNSYNN
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Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) at N-1 of the template base paired with incoming dTTP

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017mz8_T_DC1_DC2BBBBB00260.20 BB00
027mz8_T_DC2_DG3B12BB04890.17 BB04
037mz8_T_DG3_DA4BBBBB00780.27 BB00
047mz8_T_DA4_DC5BBBBB00510.36 BB00
057mz8_T_DC5_DG6NANNANT01.42 OP21
067mz8_T_DG6_DZM7B-ABA08290.44 BA08
077mz8_T_DZM7_DC8miBBB1580.48 BB15
087mz8_T_DC8_DG9B12BB04910.21 BB04
097mz8_T_DG9_DC10BBBBB01810.21 BB01
107mz8_T_DC10_DA11BBBBB00640.29 BB00
117mz8_T_DA11_DT12BBBBB00150.30 BB00
127mz8_T_DT12_DC13miBBB10340.34 BB10
137mz8_T_DC13_DA14BBBBB00760.30 BB00
147mz8_T_DA14_DG15miBBB15250.29 BB15
157mz8_T_DG15_DC16BBBBB00590.31 BB00
167mz8_P_DG1_DC2AAAAA00610.30 AA00
177mz8_P_DC2_DT3A-BAB05670.22 AB05
187mz8_P_DT3_DG4BBBBB01750.23 BB01
197mz8_P_DG4_DA5BBBBB00680.31 BB00
207mz8_P_DA5_DT6BBBBB01800.23 BB01
217mz8_P_DT6_DG7BBBBB00530.21 BB00
227mz8_P_DG7_DC8B-ABA05780.09 BA05
237mz8_P_DC8_DG9A-BAB01350.22 AB01
247mz8_P_DG9_DT10BBBBB00760.22 BB00
257mz8_D_DG1_DT2BBBBB00540.23 BB00
267mz8_D_DT2_DC3BBBBB00730.15 BB00
277mz8_D_DC3_DG4BBBBB00680.24 BB00
287mz8_D_DG4_DG5BB2BB07610.26 BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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