Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of human exonuclease 1 Exo1 (R92A) in complex with 5' flap DNA (uf4)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7mxx_A_DC1_DG2 | BBB | BB00 | 67 | 0.20 |
| 02 | 7mxx_A_DG2_DC3 | BBB | BB01 | 8 | 0.24 |
| 03 | 7mxx_A_DC3_DT4 | BBB | BB01 | 66 | 0.18 |
| 04 | 7mxx_A_DT4_DA5 | B-A | BA05 | 31 | 0.33 |
| 05 | 7mxx_A_DA5_DG6 | BBB | BB01 | 41 | 0.25 |
| 06 | 7mxx_A_DG6_DT7 | BBw | BB02 | 42 | 0.29 |
| 07 | 7mxx_A_DT7_DG8 | BBB | BB00 | 65 | 0.20 |
| 08 | 7mxx_A_DG8_DA9 | NAN | NANT | 0 | 0.54 |
| 09 | 7mxx_A_DA9_DC10 | NAN | NANT | 0 | 0.61 |
| 10 | 7mxx_B_DT1_DC2 | NAN | NANT | 0 | 1.43 |
| 11 | 7mxx_B_DC2_DT3 | NAN | NANT | 0 | 1.82 |
| 12 | 7mxx_B_DT3_DC4 | NAN | NANT | 0 | 0.78 |
| 13 | 7mxx_B_DC4_DG5 | NAN | NANT | 0 | 0.68 |
| 14 | 7mxx_B_DG5_DT6 | NAN | NANT | 0 | 1.40 |
| 15 | 7mxx_B_DT6_DC7 | NAN | NANT | 0 | 0.36 |
| 16 | 7mxx_B_DC7_DA8 | B12 | BB04 | 17 | 0.28 |
| 17 | 7mxx_B_DA8_DC9 | BBB | BB01 | 80 | 0.20 |
| 18 | 7mxx_B_DC9_DT10 | NAN | NANT | 0 | 0.42 |
| 19 | 7mxx_B_DT10_DA11 | BB2 | BB07 | 23 | 0.26 |
| 20 | 7mxx_B_DA11_DG12 | BBB | BB00 | 72 | 0.25 |
| 21 | 7mxx_B_DG12_DC13 | B-A | BA08 | 82 | 0.29 |
| 22 | 7mxx_B_DC13_DG14 | A-B | AB01 | 30 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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