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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' flap DNA (uf1)

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017mxw_A_DC1_DG2BBBBB00490.38 BB00
027mxw_A_DG2_DC3BBBBB01740.24 BB01
037mxw_A_DC3_DT4BBBBB00600.30 BB00
047mxw_A_DT4_DA5BBBBB00770.23 BB00
057mxw_A_DA5_DG6BBBBB00820.14 BB00
067mxw_A_DG6_DT7B12BB04190.24 BB04
077mxw_A_DT7_DC8BBBBB00530.29 BB00
087mxw_A_DC8_DG9B12BB04730.19 BB04
097mxw_A_DG9_DA10BBBBB00610.28 BB00
107mxw_A_DA10_DC11BBBBB00270.43 BB00
117mxw_A_DC11_DA12NANNANT00.49 IC06
127mxw_A_DA12_DT13miBBB12610.38 BB12
137mxw_B_DA1_DC2NANNANT01.57 OP22
147mxw_B_DC2_DG3BBBBB00860.18 BB00
157mxw_B_DG3_DA4B12BB04710.30 BB04
167mxw_B_DA4_DC5BBBBB00700.25 BB00
177mxw_B_DC5_DT6BBBBB00840.15 BB00
187mxw_B_DT6_DA7BB2BB07820.14 BB07
197mxw_B_DA7_DG8BBBBB01700.23 BB01
207mxw_B_DG8_DC9BBBBB00570.34 BB00
217mxw_B_DC9_DG10BBBBB00660.32 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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