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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (ur)

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017mxv_A_DC1_DG2BBBBB00790.17 BB00
027mxv_A_DG2_DC3BBBBB01770.16 BB01
037mxv_A_DC3_DT4BBBBB01380.28 BB01
047mxv_A_DT4_DA5BBBBB01630.17 BB01
057mxv_A_DA5_DG6BBBBB01800.16 BB01
067mxv_A_DG6_DT7BBBBB00790.28 BB00
077mxv_A_DT7_DC8BBBBB00700.28 BB00
087mxv_A_DC8_DG9B12BB04670.26 BB04
097mxv_A_DG9_DA10BBBBB00900.12 BB00
107mxv_A_DA10_DC11B-ABA01640.34 BA01
117mxv_A_DC11_DA12NANNANT00.75 AB05
127mxv_A_DA12_DT13miBBB10770.28 BB10
137mxv_B_DT1_DC2NANNANT02.01 OP19
147mxv_B_DC2_DG3BBBBB00650.27 BB00
157mxv_B_DG3_DA4BB2BB07670.25 BB07
167mxv_B_DA4_DC5BBBBB00700.27 BB00
177mxv_B_DC5_DT6BBBBB00710.22 BB00
187mxv_B_DT6_DA7BB2BB07610.21 BB07
197mxv_B_DA7_DG8BBBBB00650.37 BB00
207mxv_B_DG8_DC9B-ABA08850.25 BA08
217mxv_B_DC9_DG10A-BAB01820.15 AB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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