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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (cmr)

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017mxt_A_DC1_DG2BBwBB16910.33 BB16
027mxt_A_DG2_DC3BBBBB00780.24 BB00
037mxt_A_DC3_DT4B-ABA08700.29 BA08
047mxt_A_DT4_DA5A-BAB03750.27 AB03
057mxt_A_DA5_DG.A6B-ABA08640.30 BA08
067mxt_A_DA5_DG.B6B-ABA08840.20 BA08
077mxt_A_DG.A6_DT.A7BBBBB00230.30 BB00
087mxt_A_DG.B6_DT.B7A-BAB01320.27 AB01
097mxt_A_DT.A7_DC.A8BBBBB00460.39 BB00
107mxt_A_DT.B7_DC.B8BBBBB01870.26 BB01
117mxt_A_DC.A8_DG.A9B12BB04640.39 BB04
127mxt_A_DC.B8_DG.B9BBBBB00350.32 BB00
137mxt_A_DG.A9_DA10BBBBB00760.36 BB00
147mxt_A_DG.B9_DA10BBBBB00710.34 BB00
157mxt_A_DA10_DC11NANNANT01.25 BB02
167mxt_A_DC11_DA12NANNANT00.83 BA05
177mxt_A_DA12_DT13NANNANT00.74 AB02
187mxt_B_DC.A1_DG.A2NANNANT01.11 OP22
197mxt_B_DC.B1_DG.B2A-BAB05700.23 AB05
207mxt_B_DG.A2_DA.A3BBBBB00360.39 BB00
217mxt_B_DG.B2_DA.B3BBBBB00850.19 BB00
227mxt_B_DA.A3_DC.A4B12BB05120.49 BB05
237mxt_B_DA.B3_DC.B4BBBBB01560.32 BB01
247mxt_B_DC.A4_DT5BBwBB16700.43 BB16
257mxt_B_DC.B4_DT5BBBBB00450.28 BB00
267mxt_B_DT5_DA6B12BB04720.28 BB04
277mxt_B_DA6_DG7BBBBB00880.22 BB00
287mxt_B_DG7_DC8BBBBB00850.22 BB00
297mxt_B_DC8_DG9B12BB04680.22 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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