Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (cr)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7mxs_A_DC1_DG2 | BBB | BB00 | 26 | 0.37 |
| 02 | 7mxs_A_DG2_DC3 | BBB | BB00 | 70 | 0.19 |
| 03 | 7mxs_A_DC3_DT4 | B12 | BB04 | 42 | 0.24 |
| 04 | 7mxs_A_DT4_DA5 | miB | BB10 | 42 | 0.30 |
| 05 | 7mxs_A_DA5_DG6 | B-A | BA08 | 74 | 0.27 |
| 06 | 7mxs_A_DG6_DT7 | BBB | BB01 | 26 | 0.25 |
| 07 | 7mxs_A_DT7_DC8 | BBB | BB00 | 70 | 0.36 |
| 08 | 7mxs_A_DC8_DG9 | B12 | BB04 | 77 | 0.31 |
| 09 | 7mxs_A_DG9_DA10 | BBB | BB00 | 85 | 0.30 |
| 10 | 7mxs_A_DA10_DC11 | NAN | NANT | 0 | 1.14 |
| 11 | 7mxs_A_DC11_DA12 | NAN | NANT | 0 | 0.69 |
| 12 | 7mxs_A_DA12_DT13 | NAN | NANT | 0 | 0.76 |
| 13 | 7mxs_B_DC1_DG2 | NAN | NANT | 0 | 1.16 |
| 14 | 7mxs_B_DG2_DA3 | B12 | BB04 | 77 | 0.25 |
| 15 | 7mxs_B_DA3_DC4 | NAN | NANT | 0 | 0.35 |
| 16 | 7mxs_B_DC4_DT5 | NAN | NANT | 0 | 0.39 |
| 17 | 7mxs_B_DT5_DA6 | B12 | BB04 | 36 | 0.43 |
| 18 | 7mxs_B_DA6_DG7 | BBB | BB00 | 52 | 0.34 |
| 19 | 7mxs_B_DG7_DC8 | BBB | BB00 | 77 | 0.26 |
| 20 | 7mxs_B_DC8_DG9 | B12 | BB04 | 76 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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