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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' recessed-end DNA (r-1)

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017mxq_A_DC1_DG2BBBBB00280.32 BB00
027mxq_A_DG2_DC3BBBBB00820.17 BB00
037mxq_A_DC3_DT4NANNANT00.38 BA08
047mxq_A_DT4_DA5A-BAB03760.22 AB03
057mxq_A_DA5_DG6B-ABA08760.26 BA08
067mxq_A_DG6_DT7A-BAB01740.26 AB01
077mxq_A_DT7_DC8BBBBB00880.22 BB00
087mxq_A_DC8_DG9B12BB04800.16 BB04
097mxq_A_DG9_DA10BBBBB00700.24 BB00
107mxq_A_DA10_DC11NANNANT00.41 IC06
117mxq_A_DC11_DA12BBwBB16220.47 BB16
127mxq_A_DA12_DT13NANNANT00.93 BA08
137mxq_B_DT1_DC2AAAAA02230.49 AA02
147mxq_B_DC2_DG3B-ABA05360.47 BA05
157mxq_B_DG3_DA4A-BAB03380.30 AB03
167mxq_B_DA4_DC5BBBBB00810.22 BB00
177mxq_B_DC5_DT6BBBBB00850.25 BB00
187mxq_B_DT6_DA7B12BB04800.23 BB04
197mxq_B_DA7_DG8BBBBB00900.17 BB00
207mxq_B_DG8_DC9BBBBB00940.19 BB00
217mxq_B_DC9_DG10BBBBB00500.35 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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