Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MS2 PROTEIN CAPSID/RNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7msf_R_U1_C2 | NAN | NANT | 0 | 1.28 |
| 02 | 7msf_R_C2_G3 | AAA | AA00 | 20 | 0.35 |
| 03 | 7msf_R_G3_C4 | AAw | AA10 | 38 | 0.23 |
| 04 | 7msf_R_C4_C5 | AAA | AA08 | 63 | 0.25 |
| 05 | 7msf_R_C5_A6 | AAA | AA00 | 66 | 0.26 |
| 06 | 7msf_R_A6_A7 | OPN | OP09 | 60 | 0.25 |
| 07 | 7msf_R_A7_C8 | NAN | NANT | 0 | 0.56 |
| 08 | 7msf_R_C8_A9 | NAN | NANT | 0 | 1.39 |
| 09 | 7msf_R_A9_G10 | NAN | NANT | 0 | 0.69 |
| 10 | 7msf_R_G10_G11 | AAA | AA00 | 58 | 0.23 |
| 11 | 7msf_R_G11_C12 | AAA | AA00 | 54 | 0.18 |
| 12 | 7msf_R_C12_G13 | AAA | AA00 | 79 | 0.23 |
| 13 | 7msf_R_G13_G14 | AAw | AA01 | 83 | 0.19 |
| 14 | 7msf_S_G3_C4 | NAN | NANT | 0 | 0.40 |
| 15 | 7msf_S_C4_C5 | AAA | AA08 | 18 | 0.39 |
| 16 | 7msf_S_C5_A6 | AAA | AA00 | 59 | 0.25 |
| 17 | 7msf_S_A6_A7 | OPN | OP09 | 45 | 0.29 |
| 18 | 7msf_S_A7_C8 | NAN | NANT | 0 | 1.45 |
| 19 | 7msf_S_C8_A9 | NAN | NANT | 0 | 1.49 |
| 20 | 7msf_S_A9_G10 | NAN | NANT | 0 | 0.69 |
| 21 | 7msf_S_G10_G11 | AAA | AA00 | 25 | 0.31 |
| 22 | 7msf_S_G11_C12 | AAA | AA04 | 79 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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