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Conformers: ABBIImiBZICOPNSYNN
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MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017mjx_D_G29_G30AAAAA00840.17 AA00
027mjx_D_G30_A31AAAAA00940.11 AA00
037mjx_D_A31_C32ZZZZZ01840.24 ZZ01
047mjx_D_C32_U33NANNANT00.95 OP13
057mjx_D_U33_G34OPNOP11840.37 OP11
067mjx_D_G34_A35NANNANT00.86 IC07
077mjx_D_A35_A36NANNANT01.08 AB05
087mjx_D_A38_U39AAAAA08830.22 AA08
097mjx_D_U39_C40AAAAA08910.24 AA08
107mjx_D_C40_C41AAAAA00900.17 AA00
117mjx_M_G29_G30AAAAA00900.12 AA00
127mjx_M_G30_A31AAAAA00900.14 AA00
137mjx_M_A31_C32ZZZZZ01780.27 ZZ01
147mjx_M_C32_U33NANNANT00.94 OP13
157mjx_M_U33_G34OPNOP11840.40 OP11
167mjx_M_G34_A35NANNANT00.88 IC07
177mjx_M_A35_A36NANNANT01.11 AB05
187mjx_M_A38_U39AAAAA08770.20 AA08
197mjx_M_U39_C40AAAAA08880.25 AA08
207mjx_M_C40_C41AAAAA00960.12 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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