Conformers:
ABBIImiBZICOPNSYNN
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Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7mjw_M_G29_G30 | AAA | AA00 | 88 | 0.16 |
| 02 | 7mjw_M_G30_A31 | AAA | AA00 | 92 | 0.12 |
| 03 | 7mjw_M_A31_C32 | ZZZ | ZZ01 | 81 | 0.25 |
| 04 | 7mjw_M_C32_U33 | NAN | NANT | 0 | 0.96 |
| 05 | 7mjw_M_U33_G34 | OPN | OP11 | 86 | 0.36 |
| 06 | 7mjw_M_G34_A35 | NAN | NANT | 0 | 0.87 |
| 07 | 7mjw_M_A35_A36 | NAN | NANT | 0 | 1.08 |
| 08 | 7mjw_M_A38_U39 | AAA | AA00 | 63 | 0.31 |
| 09 | 7mjw_M_U39_C40 | AAA | AA08 | 90 | 0.24 |
| 10 | 7mjw_M_C40_C41 | AAA | AA00 | 91 | 0.17 |
| 11 | 7mjw_G_G29_G30 | AAA | AA00 | 89 | 0.14 |
| 12 | 7mjw_G_G30_A31 | AAA | AA00 | 89 | 0.14 |
| 13 | 7mjw_G_A31_C32 | ZZZ | ZZ01 | 82 | 0.25 |
| 14 | 7mjw_G_C32_U33 | NAN | NANT | 0 | 0.95 |
| 15 | 7mjw_G_U33_G34 | OPN | OP11 | 86 | 0.39 |
| 16 | 7mjw_G_G34_A35 | NAN | NANT | 0 | 0.87 |
| 17 | 7mjw_G_A35_A36 | NAN | NANT | 0 | 1.10 |
| 18 | 7mjw_G_A38_U39 | AAA | AA00 | 66 | 0.30 |
| 19 | 7mjw_G_U39_C40 | AAA | AA08 | 88 | 0.25 |
| 20 | 7mjw_G_C40_C41 | AAA | AA00 | 83 | 0.15 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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