Conformers:
ABBIImiBZICOPNSYNN
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RNA bulged-G motif
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7m3v_A_U1_G2 | NAN | NANT | 0 | 1.44 |
| 02 | 7m3v_A_G2_C3 | AAA | AA00 | 78 | 0.27 |
| 03 | 7m3v_A_C3_U4 | AAA | AA08 | 85 | 0.18 |
| 04 | 7m3v_A_U4_C5 | AAA | AA00 | 76 | 0.22 |
| 05 | 7m3v_A_C5_C6 | AAA | AA00 | 86 | 0.18 |
| 06 | 7m3v_A_C6_U7 | AAA | AA00 | 48 | 0.39 |
| 07 | 7m3v_A_U7_A8 | ZZZ | ZZ01 | 96 | 0.11 |
| 08 | 7m3v_A_A8_G9 | OPN | OP23 | 86 | 0.13 |
| 09 | 7m3v_A_G9_U10 | OPN | OP15 | 64 | 0.12 |
| 10 | 7m3v_A_U10_A11 | AAA | AA00 | 69 | 0.27 |
| 11 | 7m3v_A_A11_C12 | AAA | AA08 | 17 | 0.45 |
| 12 | 7m3v_A_C12_G13 | AAA | AA00 | 82 | 0.24 |
| 13 | 7m3v_A_G13_A14 | OPN | OP04 | 58 | 0.38 |
| 14 | 7m3v_A_A14_G15 | AAA | AA08 | 55 | 0.44 |
| 15 | 7m3v_A_G15_A16 | AAA | AA00 | 71 | 0.26 |
| 16 | 7m3v_A_A16_G17 | NAN | NANT | 0 | 0.80 |
| 17 | 7m3v_A_G17_G18 | AAA | AA00 | 46 | 0.43 |
| 18 | 7m3v_A_G18_A19 | NAN | NANT | 0 | 1.29 |
| 19 | 7m3v_A_A19_C20 | AAA | AA00 | 63 | 0.26 |
| 20 | 7m3v_A_C20_C21 | AAA | AA00 | 33 | 0.41 |
| 21 | 7m3v_A_C21_G22 | AAA | AA00 | 25 | 0.49 |
| 22 | 7m3v_A_G22_G23 | AAA | AA00 | 73 | 0.25 |
| 23 | 7m3v_A_G23_A24 | AAA | AA00 | 88 | 0.13 |
| 24 | 7m3v_A_A24_G25 | AAA | AA00 | 87 | 0.15 |
| 25 | 7m3v_A_G25_U26 | AAA | AA00 | 75 | 0.22 |
| 26 | 7m3v_A_U26_G27 | AAA | AA00 | 76 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A-B | ||||
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| B | ||||
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