Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystallographic structure of a cubic crystal of STMV (80.7 degree rotation about 111) grown from chloride

Results of the assignment of 111 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017m3t_P_A.A163_A.A164AAAAA08750.33 AA08
0027m3t_P_A.A164_A.A165NANNANT00.80 AA13
0037m3t_P_A.A165_A.A166NANNANT00.77 IC03
0047m3t_P_A.A166_A.A167AAAAA08120.77 AA08
0057m3t_P_A.A167_A.A168AAAAA08630.39 AA08
0067m3t_P_A.A168_A.A169NANNANT00.77 AA07
0077m3t_S_A.A163_A.A164NANNANT01.21 OP31
0087m3t_S_A.A164_A.A165AAwAA01410.38 AA01
0097m3t_S_A.A165_A.A166AAAAA08430.31 AA08
0107m3t_S_A.A166_A.A167AAAAA00760.23 AA00
0117m3t_T_A.A164_A.A165AAuAA12340.41 AA12
0127m3t_T_A.A165_A.A166NANNANT00.70 AA11
0137m3t_T_A.A166_A.A167NANNANT01.43 OP24
0147m3t_T_A.A167_A.A168NANNANT00.46 IC03
0157m3t_V_A162_A163AAAAA00820.24 AA00
0167m3t_V_A163_A.A164NANNANT01.24 AA11
0177m3t_V_A.A164_A.A165AAAAA08610.43 AA08
0187m3t_V_A.A165_A.A166AAAAA03130.61 AA03
0197m3t_V_A.A166_A.A167NANNANT00.49 AA10
0207m3t_V_A.A167_A.A168NANNANT00.76 AA01
0217m3t_V_A.A168_A.A169NANNANT02.29 BB1S
0227m3t_X_A.A162_A.A163NANNANT01.06 IC07
0237m3t_X_A.A163_A.A164NANNANT00.65 AA01
0247m3t_X_A.A164_A.A165NANNANT00.51 AA05
0257m3t_X_A.A165_A.A166AAwAA06720.36 AA06
0267m3t_X_A.A166_A.A167NANNANT00.92 AA06
0277m3t_X_A.A167_A.A168AAwAA06800.34 AA06
0287m3t_X_A.A168_A.A169NANNANT00.98 AB05
0297m3t_Y_A.A163_A.A164AAAAA00360.30 AA00
0307m3t_Y_A.A164_A.A165AAAAA00720.13 AA00
0317m3t_Y_A.A165_A.A166AAAAA00650.24 AA00
0327m3t_Y_A.A166_A.A167AAAAA00700.29 AA00
0337m3t_Y_A.A167_A.A168NANNANT00.74 AB04
0347m3t_a_A.A164_A.A165NANNANT00.98 IC07
0357m3t_a_A.A165_A.A166NANNANT00.56 AA08
0367m3t_a_A.A166_A.A167AAwAA01390.29 AA01
0377m3t_a_A.A167_A.A168AAwAA11770.26 AA11
0387m3t_a_A.A168_A.A169NANNANT01.85 IC07
0397m3t_e_U180_U.A181NANNANT01.02 OP03
0407m3t_e_U.A181_U.A182NANNANT01.15 AB02
0417m3t_e_U.A182_U.A183NANNANT01.59 OP31
0427m3t_e_U.A183_U.A184NANNANT01.43 AA10
0437m3t_e_U.A184_U.A185NANNANT00.76 BB1S
0447m3t_e_U.A185_U.A186NANNANT00.55 AA01
0457m3t_e_U.A186_U.A187NANNANT00.65 AA04
0467m3t_e_U.A187_U.A188NANNANT00.45 AA07
0477m3t_e_U.A188_U.A189NANNANT00.86 AA10
0487m3t_e_U.A189_U.A190AAAAA02140.46 AA02
0497m3t_h_A183_U.A184NANNANT01.66 OP26
0507m3t_h_U.A184_U.A185AAAAA00910.14 AA00
0517m3t_h_U.A185_U.A186AAAAA00660.29 AA00
0527m3t_h_U.A186_U.A187NANNANT00.40 AA10
0537m3t_h_U.A187_U.A188AAAAA08390.44 AA08
0547m3t_h_U.A188_U.A189AAwAA01350.43 AA01
0557m3t_h_U.A189_U.A190NANNANT00.70 IC04
0567m3t_i_U.A184_U.A185NANNANT00.63 AAS1
0577m3t_i_U.A185_U.A186AAAAA00730.22 AA00
0587m3t_i_U.A186_U.A187AAwAA10890.17 AA10
0597m3t_i_U.A187_U.A188NANNANT00.83 IC04
0607m3t_m_U.A182_U.A183AAwAA10280.61 AA10
0617m3t_m_U.A183_U.A184AAAAA08390.40 AA08
0627m3t_m_U.A184_U.A185AAwAA10430.52 AA10
0637m3t_m_U.A185_U.A186AAAAA04530.51 AA04
0647m3t_m_U.A186_U.A187AAwAA10600.31 AA10
0657m3t_m_U.A187_U.A188AAwAA10830.18 AA10
0667m3t_m_U.A188_U.A189NANNANT00.56 AA04
0677m3t_m_U.A189_U.A190NANNANT00.65 AA10
0687m3t_n_U.A182_U.A183NANNANT00.70 AA00
0697m3t_n_U.A183_U.A184NANNANT00.64 AA10
0707m3t_n_U.A184_U.A185NANNANT01.00 AA04
0717m3t_TT_A.A164_A165NANNANT01.68 ZZ2S
0727m3t_TT_A165_A.A166NANNANT00.98 OP03
0737m3t_TT_A.A166_A.A167NANNANT00.74 AB02
0747m3t_TT_A.A167_A.A168NANNANT00.63 AA01
0757m3t_TT_A.A168_A.A169NANNANT00.74 AA08
0767m3t_TT_A.A169_A.A170NANNANT02.69 IC03
0777m3t_UU_A162_A.A163NANNANT00.43 AA10
0787m3t_UU_A.A163_A.A164AAAAA08130.58 AA08
0797m3t_UU_A.A164_A.A165AAAAA08900.25 AA08
0807m3t_UU_A.A165_A.A166AAAAA00120.34 AA00
0817m3t_UU_A.A166_A.A167AAAAA02410.31 AA02
0827m3t_WW_U165_U.A166NANNANT00.94 OP26
0837m3t_WW_U.A166_U.A167NANNANT00.43 AA03
0847m3t_WW_U.A167_U168AAwAA01820.16 AA01
0857m3t_WW_U168_U169AAwAA10310.50 AA10
0867m3t_WW_U169_U170AAAAA08530.35 AA08
0877m3t_WW_U170_U171NANNANT01.13 OP02
0887m3t_WW_U171_U172NANNANT01.10 OP07
0897m3t_bb_A157_A158NANNANT01.60 OP13
0907m3t_bb_A158_A159NANNANT01.60 AA10
0917m3t_bb_A159_A160NANNANT02.08 OP16
0927m3t_bb_A160_A.A161NANNANT01.21 OP06
0937m3t_bb_A.A161_A.A162NANNANT00.61 AA10
0947m3t_bb_A.A162_A.A163AAAAA03190.57 AA03
0957m3t_bb_A.A163_A.A164AAwAA01700.24 AA01
0967m3t_bb_A.A164_A.A165NANNANT00.68 AA11
0977m3t_bb_A.A165_A.A166NANNANT00.73 AA03
0987m3t_bb_A.A166_A.A167AAwAA01150.40 AA01
0997m3t_bb_A.A167_A.A168ICLIC0370.63 IC03
1007m3t_kk_U182_U.A183NANNANT02.01 OP18
1017m3t_kk_U.A183_U.A184NANNANT01.04 OP12
1027m3t_kk_U.A184_U.A185AAAAA08850.34 AA08
1037m3t_kk_U.A185_U.A186AAuAA12340.55 AA12
1047m3t_kk_U.A186_U.A187NANNANT00.34 IC07
1057m3t_kk_U.A187_U.A188NANNANT01.14 IC04
1067m3t_ll_U.A184_U.A185NANNANT00.79 BBS1
1077m3t_ll_U.A185_U.A186NANNANT00.85 AA10
1087m3t_ll_U.A186_U.A187NANNANT00.85 AA06
1097m3t_ll_U.A187_U.A188NANNANT02.50 OP09
1107m3t_qq_U.A184_U.A185NANNANT01.56 OP1S
1117m3t_qq_U.A185_U186NANNANT01.83 ZZS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N