Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HSV1 polymerase ternary complex with dsDNA and PNU-183792
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 62 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7luf_C_DA-12_DT-11 | BBB | BB00 | 69 | 0.35 |
| 02 | 7luf_C_DT-11_DG-10 | NAN | NANT | 0 | 1.99 |
| 03 | 7luf_C_DG-10_DG-9 | NAN | NANT | 0 | 1.09 |
| 04 | 7luf_C_DG-9_DT-8 | BBw | BB02 | 52 | 0.43 |
| 05 | 7luf_C_DT-8_DA-7 | NAN | NANT | 0 | 0.44 |
| 06 | 7luf_C_DA-7_DG-6 | NAN | NANT | 0 | 0.63 |
| 07 | 7luf_C_DG-6_DG-5 | NAN | NANT | 0 | 0.39 |
| 08 | 7luf_C_DG-5_DG-4 | BBB | BB00 | 80 | 0.21 |
| 09 | 7luf_C_DG-4_DG-3 | B12 | BB04 | 30 | 0.19 |
| 10 | 7luf_C_DG-3_DA-2 | BBB | BB00 | 39 | 0.30 |
| 11 | 7luf_C_DA-2_DA-1 | BBB | BB00 | 80 | 0.13 |
| 12 | 7luf_C_DA-1_DG0 | miB | BB15 | 71 | 0.23 |
| 13 | 7luf_C_DG0_DG1 | B12 | BB04 | 73 | 0.18 |
| 14 | 7luf_C_DG1_DA2 | miB | BB15 | 49 | 0.30 |
| 15 | 7luf_C_DA2_DT3 | miB | BB10 | 25 | 0.38 |
| 16 | 7luf_C_DT3_DC4 | miB | BB10 | 65 | 0.27 |
| 17 | 7luf_C_DC4_DG5 | B12 | BB04 | 25 | 0.21 |
| 18 | 7luf_D_DC-13_DG-12 | B12 | BB04 | 24 | 0.30 |
| 19 | 7luf_D_DG-12_DA-11 | NAN | NANT | 0 | 0.60 |
| 20 | 7luf_D_DA-11_DT-10 | NAN | NANT | 0 | 0.73 |
| 21 | 7luf_D_DT-10_DC-9 | NAN | NANT | 0 | 0.48 |
| 22 | 7luf_D_DC-9_DC-8 | A-B | AB03 | 47 | 0.41 |
| 23 | 7luf_D_DC-8_DT-7 | BBw | BB02 | 44 | 0.29 |
| 24 | 7luf_D_DT-7_DT-6 | B-A | BA05 | 75 | 0.27 |
| 25 | 7luf_D_DT-6_DC-5 | BBB | BB01 | 44 | 0.20 |
| 26 | 7luf_D_DC-5_DC-4 | BBB | BB00 | 14 | 0.31 |
| 27 | 7luf_D_DC-4_DC-3 | BBw | BB02 | 61 | 0.35 |
| 28 | 7luf_D_DC-3_DC-2 | BBw | BB03 | 43 | 0.31 |
| 29 | 7luf_D_DC-2_DT-1 | NAN | NANT | 0 | 0.63 |
| 30 | 7luf_D_DT-1_DA0 | NAN | NANT | 0 | 0.56 |
| 31 | 7luf_D_DA0_DC1 | NAN | NANT | 0 | 0.33 |
| 32 | 7luf_E_DA-12_DT-11 | BBB | BB00 | 64 | 0.37 |
| 33 | 7luf_E_DT-11_DG-10 | NAN | NANT | 0 | 2.00 |
| 34 | 7luf_E_DG-10_DG-9 | NAN | NANT | 0 | 1.06 |
| 35 | 7luf_E_DG-9_DT-8 | BBw | BB02 | 51 | 0.43 |
| 36 | 7luf_E_DT-8_DA-7 | NAN | NANT | 0 | 0.44 |
| 37 | 7luf_E_DA-7_DG-6 | NAN | NANT | 0 | 0.63 |
| 38 | 7luf_E_DG-6_DG-5 | NAN | NANT | 0 | 0.40 |
| 39 | 7luf_E_DG-5_DG-4 | BBB | BB00 | 80 | 0.21 |
| 40 | 7luf_E_DG-4_DG-3 | B12 | BB04 | 36 | 0.20 |
| 41 | 7luf_E_DG-3_DA-2 | BBB | BB00 | 41 | 0.28 |
| 42 | 7luf_E_DA-2_DA-1 | BBB | BB00 | 79 | 0.15 |
| 43 | 7luf_E_DA-1_DG0 | miB | BB15 | 72 | 0.23 |
| 44 | 7luf_E_DG0_DG1 | B12 | BB04 | 79 | 0.14 |
| 45 | 7luf_E_DG1_DA2 | miB | BB15 | 50 | 0.32 |
| 46 | 7luf_E_DA2_DT3 | miB | BB10 | 26 | 0.41 |
| 47 | 7luf_E_DT3_DC4 | miB | BB10 | 62 | 0.32 |
| 48 | 7luf_E_DC4_DG5 | B12 | BB04 | 23 | 0.20 |
| 49 | 7luf_F_DC-13_DG-12 | B12 | BB04 | 26 | 0.24 |
| 50 | 7luf_F_DG-12_DA-11 | B12 | BB04 | 50 | 0.20 |
| 51 | 7luf_F_DA-11_DT-10 | BBB | BB00 | 91 | 0.18 |
| 52 | 7luf_F_DT-10_DC-9 | NAN | NANT | 0 | 0.52 |
| 53 | 7luf_F_DC-9_DC-8 | A-B | AB03 | 51 | 0.25 |
| 54 | 7luf_F_DC-8_DT-7 | BBw | BB02 | 47 | 0.30 |
| 55 | 7luf_F_DT-7_DT-6 | B-A | BA05 | 77 | 0.27 |
| 56 | 7luf_F_DT-6_DC-5 | BBB | BB01 | 36 | 0.21 |
| 57 | 7luf_F_DC-5_DC-4 | BBB | BB00 | 10 | 0.31 |
| 58 | 7luf_F_DC-4_DC-3 | BBw | BB02 | 59 | 0.33 |
| 59 | 7luf_F_DC-3_DC-2 | BBw | BB03 | 44 | 0.30 |
| 60 | 7luf_F_DC-2_DT-1 | NAN | NANT | 0 | 0.62 |
| 61 | 7luf_F_DT-1_DA0 | NAN | NANT | 0 | 0.45 |
| 62 | 7luf_F_DA0_DC1 | NAN | NANT | 0 | 0.35 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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