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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of BRPF2 PWWP domain in complex with DNA

Results of the assignment of 88 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017lh9_E_DG1_DC2BBBBB00820.32 BB00
027lh9_E_DC2_DC3BBBBB00740.31 BB00
037lh9_E_DC3_DA4BB2BB07450.16 BB07
047lh9_E_DA4_DT5BBBBB00510.21 BB00
057lh9_E_DT5_DC6miBBB10610.30 BB10
067lh9_E_DC6_DG7BBBBB00250.23 BB00
077lh9_E_DG7_DA8miBBB15190.50 BB15
087lh9_E_DA8_DT9B-ABA05590.39 BA05
097lh9_E_DT9_DG10A-BAB03520.15 AB03
107lh9_E_DG10_DG11B12BB04880.16 BB04
117lh9_E_DG11_DC12B-ABA01740.17 BA01
127lh9_F_DG1_DC2BBBBB00900.26 BB00
137lh9_F_DC2_DC3BBBBB00700.33 BB00
147lh9_F_DC3_DA4BB2BB07850.29 BB07
157lh9_F_DA4_DT5BBBBB01840.23 BB01
167lh9_F_DT5_DC6BBBBB00510.25 BB00
177lh9_F_DC6_DG7B12BB04440.28 BB04
187lh9_F_DG7_DA8BBBBB00830.24 BB00
197lh9_F_DA8_DT9BBBBB01900.16 BB01
207lh9_F_DT9_DG10B12BB04210.32 BB04
217lh9_F_DG10_DG11BB2BB07720.18 BB07
227lh9_F_DG11_DC12B-ABA05170.28 BA05
237lh9_G_DG1_DC2BBBBB00620.37 BB00
247lh9_G_DC2_DC3BBBBB0190.43 BB01
257lh9_G_DC3_DA4NANNANT00.60 BB10
267lh9_G_DA4_DT5NANNANT00.69 BB17
277lh9_G_DT5_DC6BBBBB00430.26 BB00
287lh9_G_DC6_DG7NANNANT00.34 BB10
297lh9_G_DG7_DA8NANNANT00.39 BB07
307lh9_G_DA8_DT9B-ABA05560.32 BA05
317lh9_G_DT9_DG10BBBBB01440.25 BB01
327lh9_G_DG10_DG11BBBBB00660.40 BB00
337lh9_G_DG11_DC12B-ABA01400.33 BA01
347lh9_H_DG1_DC2BBBBB00590.19 BB00
357lh9_H_DC2_DC3BBBBB00880.16 BB00
367lh9_H_DC3_DA4B12BB04930.20 BB04
377lh9_H_DA4_DT5BBBBB01880.16 BB01
387lh9_H_DT5_DC6BBBBB00360.22 BB00
397lh9_H_DC6_DG7BB2BB07780.14 BB07
407lh9_H_DG7_DA8B12BB04600.20 BB04
417lh9_H_DA8_DT9A-BAB03320.38 AB03
427lh9_H_DT9_DG10B12BB04240.30 BB04
437lh9_H_DG10_DG11NANNANT00.53 BB10
447lh9_H_DG11_DC12B-ABA01390.30 BA01
457lh9_I_DG1_DC2BBBBB00860.22 BB00
467lh9_I_DC2_DC3BBBBB00770.24 BB00
477lh9_I_DC3_DA4BB2BB07950.20 BB07
487lh9_I_DA4_DT5B-ABA01720.24 BA01
497lh9_I_DT5_DC6A-BAB01530.34 AB01
507lh9_I_DC6_DG7NANNANT00.28 BB10
517lh9_I_DG7_DA8BB2BB07670.24 BB07
527lh9_I_DA8_DT9miBBB10750.35 BB10
537lh9_I_DT9_DG10B12BB04350.23 BB04
547lh9_I_DG10_DG11BB2BB07620.30 BB07
557lh9_I_DG11_DC12B-ABA05610.16 BA05
567lh9_J_DG1_DC2BBBBB00730.24 BB00
577lh9_J_DC2_DC3miBBB10490.31 BB10
587lh9_J_DC3_DA4B12BB04780.25 BB04
597lh9_J_DA4_DT5BBBBB00620.17 BB00
607lh9_J_DT5_DC6BBBBB00790.28 BB00
617lh9_J_DC6_DG7BB2BB07630.19 BB07
627lh9_J_DG7_DA8NANNANT00.23 BB10
637lh9_J_DA8_DT9B-ABA17450.34 BA17
647lh9_J_DT9_DG10A-BAB03680.23 AB03
657lh9_J_DG10_DG11BBBBB00620.43 BB00
667lh9_J_DG11_DC12NANNANT00.48 BB12
677lh9_K_DG1_DC2BB2BB07270.33 BB07
687lh9_K_DC2_DC3miBBB10580.23 BB10
697lh9_K_DC3_DA4miBBB10510.50 BB10
707lh9_K_DA4_DT5miBBB10630.22 BB10
717lh9_K_DT5_DC6A-BAB03570.27 AB03
727lh9_K_DC6_DG7miBBB10700.23 BB10
737lh9_K_DG7_DA8A-BAB03250.38 AB03
747lh9_K_DA8_DT9BBBBB00880.14 BB00
757lh9_K_DT9_DG10B12BB04710.31 BB04
767lh9_K_DG10_DG11BBBBB00890.17 BB00
777lh9_K_DG11_DC12B-ABA01250.19 BA01
787lh9_L_DG1_DC2B12BB04640.20 BB04
797lh9_L_DC2_DC3miBBB10720.24 BB10
807lh9_L_DC3_DA4B12BB04660.21 BB04
817lh9_L_DA4_DT5BBBBB00750.19 BB00
827lh9_L_DT5_DC6miBBB10720.35 BB10
837lh9_L_DC6_DG7B12BB04340.28 BB04
847lh9_L_DG7_DA8BBBBB00610.32 BB00
857lh9_L_DA8_DT9BBBBB00870.16 BB00
867lh9_L_DT9_DG10miBBB10610.25 BB10
877lh9_L_DG10_DG11B12BB04260.28 BB04
887lh9_L_DG11_DC12NANNANT00.37 BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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