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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the DRM2-CCT DNA complex

Results of the assignment of 62 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017l4m_C_DT1_DA2BBBBB00550.37 BB00
027l4m_C_DA2_DA3BBBBB00880.16 BB00
037l4m_C_DA3_DA4BBBBB00560.27 BB00
047l4m_C_DA4_DG5BBBBB00770.14 BB00
057l4m_C_DG5_DG6BBBBB00650.20 BB00
067l4m_C_DG6_DA7B12BB04520.17 BB04
077l4m_C_DA7_DG8NANNANT00.63 BA08
087l4m_C_DG8_DG9NANNANT01.07 AB02
097l4m_C_DG9_DA10B12BB04700.22 BB04
107l4m_C_DA10_DG11BBBBB00370.37 BB00
117l4m_C_DG11_DG12NANNANT00.68 BB02
127l4m_C_DG12_DA13BBwBB03750.31 BB03
137l4m_C_DA13_DG14BBBBB00380.51 BB00
147l4m_C_DG14_DG15B-ABA10580.34 BA10
157l4m_C_DG15_DA16NANNANT00.42 AB05
167l4m_C_DA16_DA17B-ABA09120.40 BA09
177l4m_C_DA17_DT18NANNANT00.69 AA11
187l4m_D_DA1_DT2AAwAA01700.26 AA01
197l4m_D_DT2_DT3NANNANT00.70 AA10
207l4m_D_DT3_DC4NANNANT00.52 AB03
217l4m_D_DC4_DC5BBBBB00780.26 BB00
227l4m_D_DC5_DT6BBBBB00740.25 BB00
237l4m_D_DT6_DC7B-ABA01610.23 BA01
247l4m_D_DC7_DC8A-BAB01900.18 AB01
257l4m_D_DC8_DT9NANNANT00.61 BB02
267l4m_D_DC11_DT12BBBBB00160.49 BB00
277l4m_D_DT12_DC13BBBBB00910.19 BB00
287l4m_D_DC13_DC14B-ABA08670.29 BA08
297l4m_D_DC14_DT15BBBBB01740.18 BB01
307l4m_D_DT15_DT16BBBBB01620.20 BB01
317l4m_D_DT16_DT17BBBBB01750.14 BB01
327l4m_D_DT17_DA18BBBBB00710.31 BB00
337l4m_E_DT1_DA2BBBBB00250.47 BB00
347l4m_E_DA2_DA3B-ABA01330.25 BA01
357l4m_E_DA3_DA4NANNANT01.39 OP24
367l4m_E_DA4_DG5NANNANT01.33 OP24
377l4m_E_DG5_DG6NANNANT00.43 AB02
387l4m_E_DG6_DA7BBBBB00680.40 BB00
397l4m_E_DA7_DG8B-ABA10650.31 BA10
407l4m_E_DG8_DG9NANNANT00.43 IC04
417l4m_E_DG9_DA10A-BAB01660.24 AB01
427l4m_E_DA10_DG11miBBB15510.25 BB15
437l4m_E_DG11_DG12B12BB05470.34 BB05
447l4m_E_DG12_DA13NANNANT00.64 BB00
457l4m_E_DA13_DG14BBBBB00670.32 BB00
467l4m_E_DG14_DG15NANNANT00.50 BA08
477l4m_E_DG15_DA16A-BAB03450.38 AB03
487l4m_E_DA16_DA17BBBBB00900.18 BB00
497l4m_E_DA17_DT18miBBB12350.32 BB12
507l4m_G_DA1_DT2BBwBB02300.32 BB02
517l4m_G_DT2_DT3BBBBB01360.46 BB01
527l4m_G_DT3_DC4miBBB14660.37 BB14
537l4m_G_DC4_DC5miBBB12540.39 BB12
547l4m_G_DC5_DT6NANNANT00.66 BB10
557l4m_G_DT6_DC7B-ABA08650.59 BA08
567l4m_G_DC7_DC8NANNANT00.44 AA09
577l4m_G_DC8_DT9AAAAA02140.55 AA02
587l4m_G_DC11_DT12NANNANT00.70 IC03
597l4m_G_DT12_DC13B-ABA05320.41 BA05
607l4m_G_DC13_DC14NANNANT00.55 AB02
617l4m_G_DC14_DT15BB2BB08540.46 BB08
627l4m_G_DT15_DT16BBBBB00630.36 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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