Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the DRM2-CTG DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7l4h_B_DT1_DA2 | BB2 | BB07 | 82 | 0.22 |
| 02 | 7l4h_B_DA2_DA3 | BBB | BB01 | 89 | 0.16 |
| 03 | 7l4h_B_DA3_DA4 | BBB | BB01 | 84 | 0.17 |
| 04 | 7l4h_B_DA4_DT5 | BBB | BB01 | 69 | 0.19 |
| 05 | 7l4h_B_DT5_DT6 | B-A | BA05 | 62 | 0.21 |
| 06 | 7l4h_B_DT6_DC7 | A-B | AB01 | 71 | 0.29 |
| 07 | 7l4h_B_DC7_DA8 | B-A | BA08 | 78 | 0.20 |
| 08 | 7l4h_B_DA8_DG9 | NAN | NANT | 0 | 0.58 |
| 09 | 7l4h_B_DG9_DA10 | BBB | BB00 | 91 | 0.15 |
| 10 | 7l4h_B_DA10_DT11 | BBB | BB00 | 91 | 0.12 |
| 11 | 7l4h_B_DT11_DT12 | B-A | BA10 | 89 | 0.25 |
| 12 | 7l4h_B_DT12_DA13 | A-B | AB03 | 24 | 0.37 |
| 13 | 7l4h_B_DA13_DG14 | A-B | AB03 | 85 | 0.19 |
| 14 | 7l4h_B_DG14_DG15 | B12 | BB04 | 87 | 0.18 |
| 15 | 7l4h_B_DG15_DA16 | BBB | BB00 | 57 | 0.30 |
| 16 | 7l4h_B_DA16_DA17 | B-A | BA08 | 58 | 0.33 |
| 17 | 7l4h_B_DA17_DT18 | NAN | NANT | 0 | 0.40 |
| 18 | 7l4h_C_DA1_DT2 | BBw | BB03 | 49 | 0.29 |
| 19 | 7l4h_C_DT2_DT3 | BBw | BB16 | 45 | 0.59 |
| 20 | 7l4h_C_DT3_DC4 | BBB | BB00 | 67 | 0.21 |
| 21 | 7l4h_C_DC4_DC5 | NAN | NANT | 0 | 0.69 |
| 22 | 7l4h_C_DC5_DT6 | A-B | AB05 | 85 | 0.20 |
| 23 | 7l4h_C_DT6_DA7 | B-A | BA05 | 64 | 0.20 |
| 24 | 7l4h_C_DA7_DA8 | A-B | AB01 | 76 | 0.28 |
| 25 | 7l4h_C_DA8_DT9 | BBB | BB00 | 59 | 0.27 |
| 26 | 7l4h_C_DT11_DG12 | BBB | BB00 | 19 | 0.49 |
| 27 | 7l4h_C_DG12_DA13 | BBB | BB00 | 81 | 0.23 |
| 28 | 7l4h_C_DA13_DA14 | B12 | BB04 | 58 | 0.21 |
| 29 | 7l4h_C_DA14_DT15 | BBB | BB01 | 14 | 0.21 |
| 30 | 7l4h_C_DT15_DT16 | BBB | BB01 | 28 | 0.32 |
| 31 | 7l4h_C_DT16_DT17 | BBw | BB02 | 65 | 0.23 |
| 32 | 7l4h_C_DT17_DA18 | BBB | BB00 | 29 | 0.46 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|