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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the DRM2-CAT DNA complex

Results of the assignment of 63 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017l4f_C_DT1_DA2BBBBB00780.28 BB00
027l4f_C_DA2_DA3BBBBB00680.20 BB00
037l4f_C_DA3_DA4BBBBB01790.20 BB01
047l4f_C_DA4_DG5BBBBB00410.23 BB00
057l4f_C_DG5_DG6BBBBB00650.14 BB00
067l4f_C_DG6_DA7BBBBB00890.27 BB00
077l4f_C_DA7_DT8NANNANT00.41 BA05
087l4f_C_DT8_DG9NANNANT00.86 IC07
097l4f_C_DG9_DA10BBBBB00700.28 BB00
107l4f_C_DA10_DG11BBBBB00290.31 BB00
117l4f_C_DG11_DG12NANNANT00.64 BB02
127l4f_C_DG12_DA13BBBBB00310.35 BB00
137l4f_C_DA13_DG14BBBBB00740.26 BB00
147l4f_C_DG14_DG15B-ABA13600.25 BA13
157l4f_C_DG15_DA16A-BAB0170.50 AB01
167l4f_C_DA16_DA17NANNANT00.51 BA09
177l4f_C_DA17_DT18NANNANT00.63 AA11
187l4f_D_DA1_DT2NANNANT00.31 AA01
197l4f_D_DT2_DT3NANNANT00.45 AB04
207l4f_D_DT3_DC4A-BAB03760.34 AB03
217l4f_D_DC4_DC5BBBBB01800.17 BB01
227l4f_D_DC5_DT6BBBBB00500.33 BB00
237l4f_D_DT6_DC7B-ABA01260.24 BA01
247l4f_D_DC7_DC8A-BAB01840.23 AB01
257l4f_D_DC8_DT9BBBBB00310.35 BB00
267l4f_D_DA11_DT12BBBBB00340.42 BB00
277l4f_D_DT12_DC13BBBBB00740.18 BB00
287l4f_D_DC13_DC14B-ABA0590.40 BA05
297l4f_D_DC14_DT15BBBBB01680.25 BB01
307l4f_D_DT15_DT16BBBBB01800.14 BB01
317l4f_D_DT16_DT17BBBBB01730.14 BB01
327l4f_D_DT17_DA18BBBBB00720.28 BB00
337l4f_E_DT1_DA2BBBBB00260.47 BB00
347l4f_E_DA2_DA3NANNANT00.37 BA08
357l4f_E_DA3_DA4NANNANT00.59 AB02
367l4f_E_DA4_DG5NANNANT00.66 AB02
377l4f_E_DG5_DG6NANNANT00.56 AB02
387l4f_E_DG6_DA7A-BAB02590.37 AB02
397l4f_E_DA7_DT8NANNANT00.43 BA10
407l4f_E_DT8_DG9NANNANT00.59 IC04
417l4f_E_DG9_DA10BBBBB00420.27 BB00
427l4f_E_DA10_DG11BBBBB00450.21 BB00
437l4f_E_DG11_DG12NANNANT00.49 BB05
447l4f_E_DG12_DA13NANNANT00.46 BB15
457l4f_E_DA13_DG14BBBBB00620.24 BB00
467l4f_E_DG14_DG15NANNANT00.55 BA08
477l4f_E_DG15_DA16A-BAB05630.32 AB05
487l4f_E_DA16_DA17BBBBB00850.16 BB00
497l4f_E_DA17_DT18miBBB12870.20 BB12
507l4f_G_DA1_DT2BBwBB02420.30 BB02
517l4f_G_DT2_DT3BBBBB00130.30 BB00
527l4f_G_DT3_DC4NANNANT00.51 BB17
537l4f_G_DC4_DC5NANNANT00.70 BA09
547l4f_G_DC5_DT6NANNANT00.84 AB02
557l4f_G_DT6_DC7NANNANT00.33 BA17
567l4f_G_DC7_DC8NANNANT00.37 AA01
577l4f_G_DC8_DT9NANNANT00.43 AB04
587l4f_G_DA11_DT12NANNANT00.69 BB02
597l4f_G_DT12_DC13B-ABA05650.34 BA05
607l4f_G_DC13_DC14NANNANT00.51 AB02
617l4f_G_DC14_DT15NANNANT00.46 BB08
627l4f_G_DT15_DT16BBBBB00350.47 BB00
637l4f_G_DT16_DT17NANNANT00.52 BA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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