DNATCO v4.1: results

Crystal structure of Squash RNA aptamer in complex with DFHBI-1T

Results of the assignment of 81 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7kvv_D_G2_G3	AAA	AA08	53	0.23	AA08
02	7kvv_D_G3_A4	AAA	AA00	89	0.16	AA00
03	7kvv_D_A4_A5	AAA	AA00	91	0.10	AA00
04	7kvv_D_A5_G6	AAA	AA00	91	0.10	AA00
05	7kvv_D_G6_A7	AAA	AA00	92	0.06	AA00
06	7kvv_D_A7_U8	AAA	AA00	93	0.12	AA00
07	7kvv_D_U8_A9	AAA	AA00	97	0.10	AA00
08	7kvv_D_A9_C10	AAA	AA00	86	0.16	AA00
09	7kvv_D_C10_A11	ICL	IC02	42	0.50	IC02
10	7kvv_D_A11_A12	NAN	NANT	0	0.41	OP15
11	7kvv_D_A12_G13	AAA	AA08	82	0.30	AA08
12	7kvv_D_G13_G14	A-B	AB05	53	0.44	AB05
13	7kvv_D_G14_U15	OPN	OP15	8	0.49	OP15
14	7kvv_D_U15_G16	AAA	AA00	18	0.50	AA00
15	7kvv_D_G16_A17	NAN	NANT	0	0.64	OP08
16	7kvv_D_A17_G18	NAN	NANT	0	1.82	OP19
17	7kvv_D_G18_C19	AAA	AA08	94	0.15	AA08
18	7kvv_D_C19_C20	AAA	AA00	66	0.26	AA00
19	7kvv_D_C20_C21	AAA	AA00	91	0.11	AA00
20	7kvv_D_C21_A22	AAA	AA00	82	0.12	AA00
21	7kvv_D_A22_A23	AAw	AA01	90	0.15	AA01
22	7kvv_D_A23_U24	AAA	AA08	68	0.21	AA08
23	7kvv_D_U24_A25	AAA	AA00	51	0.32	AA00
24	7kvv_D_A25_A26	AAA	AA00	77	0.16	AA00
25	7kvv_D_A26_U27	A-B	AB05	88	0.21	AB05
26	7kvv_D_U27_A28	NAN	NANT	0	1.08	OP22
27	7kvv_D_A28_U29	NAN	NANT	0	0.53	OP21
28	7kvv_D_U29_G30	OPN	OP11	87	0.43	OP11
29	7kvv_D_G30_G31	AAA	AA00	66	0.21	AA00
30	7kvv_D_G31_U32	OPN	OP01	83	0.40	OP01
31	7kvv_D_U32_U33	AAA	AA00	82	0.22	AA00
32	7kvv_D_U33_U34	AAA	AA00	96	0.14	AA00
33	7kvv_D_U34_G35	AAA	AA00	88	0.13	AA00
34	7kvv_D_G35_G36	AAA	AA00	91	0.07	AA00
35	7kvv_D_G36_G37	AAA	AA00	91	0.10	AA00
36	7kvv_D_G37_U38	AAA	AA00	87	0.12	AA00
37	7kvv_D_U38_U39	AAA	AA00	79	0.20	AA00
38	7kvv_D_U39_A40	AAu	AA13	71	0.35	AA13
39	7kvv_D_A40_G41	AAA	AA08	85	0.33	AA08
40	7kvv_D_G41_G42	NAN	NANT	0	1.09	IC02
41	7kvv_D_G42_A43	NAN	NANT	0	1.39	OP04
42	7kvv_D_A43_U44	AAA	AA00	16	0.39	AA00
43	7kvv_D_U44_A45	A-B	AB05	67	0.44	AB05
44	7kvv_D_A45_G46	BBw	BB16	28	0.67	BB16
45	7kvv_D_G46_G47	NAN	NANT	0	1.31	BB07
46	7kvv_D_G47_A48	NAN	NANT	0	0.79	OP20
47	7kvv_D_A48_A49	NAN	NANT	0	1.07	OP10
48	7kvv_D_A49_G50	NAN	NANT	0	0.58	IC04
49	7kvv_D_G50_U51	NAN	NANT	0	0.83	OP29
50	7kvv_D_U51_A52	NAN	NANT	0	1.83	OP17
51	7kvv_D_A52_G53	AAA	AA08	78	0.15	AA08
52	7kvv_D_G53_A54	AAA	AA08	85	0.22	AA08
53	7kvv_D_A54_G55	AAw	AA01	78	0.13	AA01
54	7kvv_D_G55_C56	AAA	AA08	84	0.28	AA08
55	7kvv_D_C56_C57	AAA	AA00	86	0.11	AA00
56	7kvv_D_C57_U58	ICL	IC04	33	0.55	IC04
57	7kvv_D_U58_U59	OPN	OP22	60	0.33	OP22
58	7kvv_D_U59_A60	NAN	NANT	0	0.61	ZZ02
59	7kvv_D_A60_A61	NAN	NANT	0	0.53	AB02
60	7kvv_D_A61_A62	B-A	BA09	62	0.26	BA09
61	7kvv_D_A62_C63	NAN	NANT	0	0.61	AA10
62	7kvv_D_C63_U64	AAA	AA08	33	0.34	AA08
63	7kvv_D_U64_C65	AAA	AA00	94	0.10	AA00
64	7kvv_D_C65_U66	AAA	AA00	94	0.14	AA00
65	7kvv_D_U66_C67	AAA	AA00	89	0.17	AA00
66	7kvv_D_C67_U68	AAA	AA08	91	0.17	AA08
67	7kvv_D_U68_A69	NAN	NANT	0	0.39	IC03
68	7kvv_D_A69_A70	NAN	NANT	0	0.85	ZZ01
69	7kvv_D_A70_G71	NAN	NANT	0	1.99	OP19
70	7kvv_D_G71_C72	NAN	NANT	0	0.85	OP27
71	7kvv_D_C72_G73	AAA	AA00	76	0.32	AA00
72	7kvv_D_G73_G74	NAN	NANT	0	0.92	AA08
73	7kvv_D_G74_U75	AAA	AA00	53	0.26	AA00
74	7kvv_D_U75_A76	AAA	AA00	97	0.09	AA00
75	7kvv_D_A76_U77	AAA	AA00	90	0.10	AA00
76	7kvv_D_U77_C78	AAA	AA00	97	0.11	AA00
77	7kvv_D_C78_U79	AAA	AA00	95	0.11	AA00
78	7kvv_D_U79_U80	AAA	AA00	88	0.13	AA00
79	7kvv_D_U80_C81	AAA	AA00	86	0.17	AA00
80	7kvv_D_C81_C82	AAA	AA00	94	0.12	AA00
81	7kvv_D_C82_C83	AAA	AA00	93	0.14	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 81 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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