DNATCO v4.1: results

Crystal structure of Squash RNA aptamer in complex with DFHBI-1T

Results of the assignment of 82 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7kvu_G_GTP1_G2	AAA	AA08	44	0.30	AA08
02	7kvu_G_G2_G3	AAA	AA00	80	0.18	AA00
03	7kvu_G_G3_A4	AAA	AA00	89	0.16	AA00
04	7kvu_G_A4_A5	AAA	AA00	96	0.07	AA00
05	7kvu_G_A5_G6	AAA	AA00	85	0.16	AA00
06	7kvu_G_G6_A7	AAA	AA00	69	0.08	AA00
07	7kvu_G_A7_U8	AAA	AA00	93	0.09	AA00
08	7kvu_G_U8_A9	AAA	AA00	76	0.17	AA00
09	7kvu_G_A9_C10	AAA	AA00	82	0.18	AA00
10	7kvu_G_C10_A11	NAN	NANT	0	0.53	IC02
11	7kvu_G_A11_A12	NAN	NANT	0	0.38	OP15
12	7kvu_G_A12_G13	AAA	AA00	36	0.39	AA00
13	7kvu_G_G13_G14	NAN	NANT	0	0.53	AB04
14	7kvu_G_G14_U15	NAN	NANT	0	1.54	OP16
15	7kvu_G_U15_G16	AAA	AA08	69	0.44	AA08
16	7kvu_G_G16_A17	NAN	NANT	0	0.64	OP08
17	7kvu_G_A17_G18	NAN	NANT	0	1.82	OP19
18	7kvu_G_G18_C19	AAA	AA08	64	0.25	AA08
19	7kvu_G_C19_C20	AAA	AA03	81	0.18	AA03
20	7kvu_G_C20_C21	AAA	AA00	67	0.21	AA00
21	7kvu_G_C21_A22	AAA	AA08	85	0.14	AA08
22	7kvu_G_A22_A23	AAw	AA01	82	0.16	AA01
23	7kvu_G_A23_U24	AAA	AA08	89	0.14	AA08
24	7kvu_G_U24_A25	AAu	AA12	52	0.29	AA12
25	7kvu_G_A25_A26	AAA	AA00	66	0.16	AA00
26	7kvu_G_A26_U27	A-B	AB05	82	0.25	AB05
27	7kvu_G_U27_A28	NAN	NANT	0	1.01	OP22
28	7kvu_G_A28_U29	NAN	NANT	0	0.49	OP21
29	7kvu_G_U29_G30	OPN	OP11	70	0.39	OP11
30	7kvu_G_G30_G31	AAA	AA00	62	0.23	AA00
31	7kvu_G_G31_U32	OPN	OP01	70	0.38	OP01
32	7kvu_G_U32_U33	AAA	AA00	80	0.19	AA00
33	7kvu_G_U33_U34	AAA	AA03	79	0.26	AA03
34	7kvu_G_U34_G35	AAA	AA00	89	0.13	AA00
35	7kvu_G_G35_G36	AAA	AA00	79	0.12	AA00
36	7kvu_G_G36_G37	AAA	AA08	85	0.19	AA08
37	7kvu_G_G37_U38	AAA	AA08	89	0.15	AA08
38	7kvu_G_U38_U39	AAA	AA08	59	0.32	AA08
39	7kvu_G_U39_A40	AAu	AA13	61	0.43	AA13
40	7kvu_G_A40_G41	AAA	AA08	65	0.35	AA08
41	7kvu_G_G41_G42	NAN	NANT	0	1.16	IC02
42	7kvu_G_G42_A43	NAN	NANT	0	1.41	OP04
43	7kvu_G_A43_U44	AAA	AA04	23	0.58	AA04
44	7kvu_G_U44_A45	A-B	AB05	11	0.48	AB05
45	7kvu_G_A45_G46	NAN	NANT	0	0.78	BB16
46	7kvu_G_G46_G47	NAN	NANT	0	1.28	BB07
47	7kvu_G_G47_A48	NAN	NANT	0	0.81	OP20
48	7kvu_G_A48_A49	NAN	NANT	0	0.68	OP15
49	7kvu_G_A49_G50	NAN	NANT	0	0.86	IC07
50	7kvu_G_G50_U51	NAN	NANT	0	0.79	OP29
51	7kvu_G_U51_A52	NAN	NANT	0	2.08	OP16
52	7kvu_G_A52_G53	AAA	AA08	61	0.23	AA08
53	7kvu_G_G53_A54	AAA	AA00	77	0.16	AA00
54	7kvu_G_A54_G55	AAw	AA01	84	0.10	AA01
55	7kvu_G_G55_C56	AAA	AA08	77	0.31	AA08
56	7kvu_G_C56_C57	AAA	AA08	91	0.12	AA08
57	7kvu_G_C57_U58	ICL	IC04	39	0.53	IC04
58	7kvu_G_U58_U59	NAN	NANT	0	0.43	OP22
59	7kvu_G_U59_A60	NAN	NANT	0	0.60	ZZ02
60	7kvu_G_A60_A61	NAN	NANT	0	0.47	AB02
61	7kvu_G_A61_A62	NAN	NANT	0	0.33	BA09
62	7kvu_G_A62_C63	NAN	NANT	0	1.02	OP08
63	7kvu_G_C63_U64	AAA	AA00	53	0.27	AA00
64	7kvu_G_U64_C65	AAA	AA00	79	0.12	AA00
65	7kvu_G_C65_U66	AAA	AA00	92	0.16	AA00
66	7kvu_G_U66_C67	AAA	AA00	77	0.20	AA00
67	7kvu_G_C67_U68	AAA	AA00	84	0.17	AA00
68	7kvu_G_U68_A69	NAN	NANT	0	0.41	IC03
69	7kvu_G_A69_A70	NAN	NANT	0	1.41	BB01
70	7kvu_G_A70_G71	NAN	NANT	0	1.97	OP19
71	7kvu_G_G71_C72	NAN	NANT	0	1.45	BA16
72	7kvu_G_C72_G73	AAA	AA00	70	0.30	AA00
73	7kvu_G_G73_G74	NAN	NANT	0	0.98	AA08
74	7kvu_G_G74_U75	AAA	AA08	29	0.33	AA08
75	7kvu_G_U75_A76	AAA	AA00	93	0.11	AA00
76	7kvu_G_A76_U77	AAA	AA00	80	0.11	AA00
77	7kvu_G_U77_C78	AAA	AA00	83	0.16	AA00
78	7kvu_G_C78_U79	AAA	AA08	77	0.20	AA08
79	7kvu_G_U79_U80	AAA	AA00	97	0.11	AA00
80	7kvu_G_U80_C81	AAA	AA00	93	0.13	AA00
81	7kvu_G_C81_C82	AAA	AA00	91	0.18	AA00
82	7kvu_G_C82_C83	AAA	AA00	93	0.18	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 82 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible