DNATCO v4.1: results

Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions

Results of the assignment of 82 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7kvt_B_GTP1_G2	AAA	AA00	66	0.25	AA00
02	7kvt_B_G2_G3	AAA	AA00	83	0.18	AA00
03	7kvt_B_G3_A4	AAA	AA00	78	0.18	AA00
04	7kvt_B_A4_A5	AAA	AA00	95	0.09	AA00
05	7kvt_B_A5_G6	AAA	AA00	86	0.15	AA00
06	7kvt_B_G6_A7	AAA	AA08	84	0.22	AA08
07	7kvt_B_A7_U8	AAA	AA00	73	0.15	AA00
08	7kvt_B_U8_A9	AAA	AA00	59	0.14	AA00
09	7kvt_B_A9_C10	AAA	AA08	83	0.12	AA08
10	7kvt_B_C10_A11	NAN	NANT	0	0.57	IC02
11	7kvt_B_A11_A12	NAN	NANT	0	0.39	OP15
12	7kvt_B_A12_G13	AAA	AA08	66	0.35	AA08
13	7kvt_B_G13_G14	NAN	NANT	0	0.52	AB05
14	7kvt_B_G14_U15	NAN	NANT	0	1.52	OP16
15	7kvt_B_U15_G16	AAA	AA08	78	0.44	AA08
16	7kvt_B_G16_A17	NAN	NANT	0	0.62	OP08
17	7kvt_B_A17_G18	NAN	NANT	0	1.81	OP19
18	7kvt_B_G18_C19	AAA	AA00	64	0.25	AA00
19	7kvt_B_C19_C20	AAA	AA03	79	0.21	AA03
20	7kvt_B_C20_C21	AAA	AA00	67	0.20	AA00
21	7kvt_B_C21_A22	AAA	AA08	83	0.14	AA08
22	7kvt_B_A22_A23	AAw	AA10	37	0.26	AA10
23	7kvt_B_A23_U24	AAA	AA08	82	0.21	AA08
24	7kvt_B_U24_A25	AAu	AA12	60	0.28	AA12
25	7kvt_B_A25_A26	AAA	AA00	77	0.19	AA00
26	7kvt_B_A26_U27	A-B	AB05	89	0.24	AB05
27	7kvt_B_U27_A28	NAN	NANT	0	1.00	OP22
28	7kvt_B_A28_U29	NAN	NANT	0	0.50	OP21
29	7kvt_B_U29_G30	NAN	NANT	0	0.50	OP11
30	7kvt_B_G30_G31	SYN	AAS1	35	0.19	AAS1
31	7kvt_B_G31_U32	OPN	OP01	73	0.41	OP01
32	7kvt_B_U32_U33	AAA	AA00	74	0.20	AA00
33	7kvt_B_U33_U34	AAA	AA03	91	0.23	AA03
34	7kvt_B_U34_G35	AAA	AA00	89	0.17	AA00
35	7kvt_B_G35_G36	AAA	AA08	69	0.22	AA08
36	7kvt_B_G36_G37	AAA	AA08	81	0.20	AA08
37	7kvt_B_G37_U38	AAA	AA08	92	0.18	AA08
38	7kvt_B_U38_U39	AAA	AA08	47	0.31	AA08
39	7kvt_B_U39_A40	AAu	AA13	60	0.41	AA13
40	7kvt_B_A40_G41	AAA	AA08	58	0.34	AA08
41	7kvt_B_G41_G42	NAN	NANT	0	1.18	IC02
42	7kvt_B_G42_A43	NAN	NANT	0	1.42	OP04
43	7kvt_B_A43_U44	AAA	AA04	26	0.59	AA04
44	7kvt_B_U44_A45	A-B	AB05	19	0.47	AB05
45	7kvt_B_A45_G46	BBw	BB16	23	0.76	BB16
46	7kvt_B_G46_G47	NAN	NANT	0	1.28	BB07
47	7kvt_B_G47_A48	NAN	NANT	0	0.80	OP20
48	7kvt_B_A48_A49	NAN	NANT	0	0.69	OP15
49	7kvt_B_A49_G50	NAN	NANT	0	0.59	IC04
50	7kvt_B_G50_U51	NAN	NANT	0	0.81	OP29
51	7kvt_B_U51_A52	NAN	NANT	0	1.08	OP13
52	7kvt_B_A52_G53	AAA	AA08	68	0.30	AA08
53	7kvt_B_G53_A54	AAA	AA00	76	0.21	AA00
54	7kvt_B_A54_G55	AAw	AA10	91	0.15	AA10
55	7kvt_B_G55_C56	AAA	AA08	78	0.24	AA08
56	7kvt_B_C56_C57	AAA	AA00	84	0.14	AA00
57	7kvt_B_C57_U58	ICL	IC04	42	0.50	IC04
58	7kvt_B_U58_U59	OPN	OP22	30	0.41	OP22
59	7kvt_B_U59_A60	NAN	NANT	0	0.60	ZZ02
60	7kvt_B_A60_A61	NAN	NANT	0	0.58	AB02
61	7kvt_B_A61_A62	NAN	NANT	0	0.74	AA10
62	7kvt_B_A62_C63	NAN	NANT	0	0.68	AA10
63	7kvt_B_C63_U64	AAA	AA00	58	0.27	AA00
64	7kvt_B_U64_C65	AAA	AA00	79	0.15	AA00
65	7kvt_B_C65_U66	AAA	AA00	86	0.18	AA00
66	7kvt_B_U66_C67	AAA	AA08	81	0.23	AA08
67	7kvt_B_C67_U68	AAA	AA00	87	0.15	AA00
68	7kvt_B_U68_A69	NAN	NANT	0	0.42	IC03
69	7kvt_B_A69_A70	NAN	NANT	0	1.40	BB01
70	7kvt_B_A70_G71	NAN	NANT	0	1.61	OP1S
71	7kvt_B_G71_C72	NAN	NANT	0	1.11	OP27
72	7kvt_B_C72_G73	AAA	AA00	70	0.30	AA00
73	7kvt_B_G73_G74	NAN	NANT	0	0.95	AA10
74	7kvt_B_G74_U75	AAA	AA08	28	0.36	AA08
75	7kvt_B_U75_A76	AAA	AA00	89	0.12	AA00
76	7kvt_B_A76_U77	AAA	AA08	93	0.13	AA08
77	7kvt_B_U77_C78	AAA	AA00	50	0.19	AA00
78	7kvt_B_C78_U79	AAA	AA08	81	0.21	AA08
79	7kvt_B_U79_U80	AAA	AA00	92	0.12	AA00
80	7kvt_B_U80_C81	AAA	AA00	92	0.13	AA00
81	7kvt_B_C81_C82	AAA	AA00	88	0.18	AA00
82	7kvt_B_C82_C83	AAA	AA00	96	0.20	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 82 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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