Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7kuo_A_LCG4_A9 | AAA | AA00 | 29 | 0.20 |
| 02 | 7kuo_A_A9_C10 | AAA | AA00 | 58 | 0.17 |
| 03 | 7kuo_A_C10_U11 | AAA | AA00 | 88 | 0.20 |
| 04 | 7kuo_A_U11_U12 | AAA | AA00 | 74 | 0.16 |
| 05 | 7kuo_A_U12_A13 | AAA | AA00 | 88 | 0.10 |
| 06 | 7kuo_A_A13_A14 | AAA | AA00 | 92 | 0.10 |
| 07 | 7kuo_A_A14_G15 | AAA | AA00 | 54 | 0.22 |
| 08 | 7kuo_A_G15_U16 | AAA | AA00 | 64 | 0.20 |
| 09 | 7kuo_A_U16_C17 | AAA | AA00 | 85 | 0.16 |
| 10 | 7kuo_A_C17_GFL19 | AAA | AA00 | 61 | 0.40 |
| 11 | 7kuo_B_LCG4_A9 | AAA | AA08 | 19 | 0.30 |
| 12 | 7kuo_B_A9_C10 | AAA | AA00 | 74 | 0.16 |
| 13 | 7kuo_B_C10_U11 | AAA | AA00 | 89 | 0.20 |
| 14 | 7kuo_B_U11_U12 | AAA | AA00 | 71 | 0.16 |
| 15 | 7kuo_B_U12_A13 | AAA | AA00 | 77 | 0.12 |
| 16 | 7kuo_B_A13_A14 | AAA | AA00 | 89 | 0.09 |
| 17 | 7kuo_B_A14_G15 | AAA | AA00 | 62 | 0.22 |
| 18 | 7kuo_B_G15_U16 | AAA | AA00 | 83 | 0.20 |
| 19 | 7kuo_B_U16_C17 | AAA | AA00 | 87 | 0.16 |
| 20 | 7kuo_B_C17_GFL19 | AAA | AA00 | 55 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|