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Conformers: ABBIImiBZICOPNSYNN
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High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017kuk_A_LCG4_A5AAAAA00520.19 AA00
027kuk_A_A5_C6AAAAA00900.17 AA00
037kuk_A_C6_U7AAAAA00780.20 AA00
047kuk_A_U7_U8AAAAA00910.11 AA00
057kuk_A_U8_A9AAAAA00880.12 AA00
067kuk_A_A9_A10AAAAA00900.11 AA00
077kuk_A_A10_G11AAAAA00750.15 AA00
087kuk_A_G11_U12AAAAA00810.17 AA00
097kuk_A_U12_C13AAAAA00790.23 AA00
107kuk_A_C13_G14AAAAA00870.19 AA00
117kuk_B_LCG4_A5AAAAA00460.18 AA00
127kuk_B_A5_C6AAAAA00920.16 AA00
137kuk_B_C6_U7AAAAA00810.19 AA00
147kuk_B_U7_U8AAAAA00900.12 AA00
157kuk_B_U8_A9AAAAA00890.12 AA00
167kuk_B_A9_A10AAAAA00860.12 AA00
177kuk_B_A10_G11AAAAA00670.14 AA00
187kuk_B_G11_U12AAAAA00840.18 AA00
197kuk_B_U12_C13AAAAA00870.23 AA00
207kuk_B_C13_G14AAAAA00850.19 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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