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Conformers: ABBIImiBZICOPNSYNN
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Ax2 Domain of VEGF Readthrough Element

Results of the assignment of 120 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017kud-m10_A_G603_G604AAAAA00980.12 AA00
0027kud-m1_A_G603_G604AAAAA00980.13 AA00
0037kud-m2_A_G603_G604AAAAA00980.13 AA00
0047kud-m3_A_G603_G604AAAAA00970.13 AA00
0057kud-m4_A_G603_G604AAAAA00980.12 AA00
0067kud-m5_A_G603_G604AAAAA00980.13 AA00
0077kud-m6_A_G603_G604AAAAA00980.14 AA00
0087kud-m7_A_G603_G604AAAAA00980.13 AA00
0097kud-m8_A_G603_G604AAAAA00980.12 AA00
0107kud-m9_A_G603_G604AAAAA00980.13 AA00
0117kud-m10_A_G604_U605AAAAA00980.14 AA00
0127kud-m1_A_G604_U605AAAAA00980.14 AA00
0137kud-m2_A_G604_U605AAAAA00980.15 AA00
0147kud-m3_A_G604_U605AAAAA00980.14 AA00
0157kud-m4_A_G604_U605AAAAA00980.14 AA00
0167kud-m5_A_G604_U605AAAAA00980.15 AA00
0177kud-m6_A_G604_U605AAAAA00980.15 AA00
0187kud-m7_A_G604_U605AAAAA00980.15 AA00
0197kud-m8_A_G604_U605AAAAA00980.14 AA00
0207kud-m9_A_G604_U605AAAAA00980.14 AA00
0217kud-m10_A_U605_U606AAAAA00970.16 AA00
0227kud-m1_A_U605_U606AAAAA00980.16 AA00
0237kud-m2_A_U605_U606AAAAA00970.17 AA00
0247kud-m3_A_U605_U606AAAAA00970.16 AA00
0257kud-m4_A_U605_U606AAAAA00970.16 AA00
0267kud-m5_A_U605_U606AAAAA00970.17 AA00
0277kud-m6_A_U605_U606AAAAA00970.17 AA00
0287kud-m7_A_U605_U606AAAAA00970.17 AA00
0297kud-m8_A_U605_U606AAAAA00970.16 AA00
0307kud-m9_A_U605_U606AAAAA00970.17 AA00
0317kud-m10_A_U606_U607AAAAA00970.18 AA00
0327kud-m1_A_U606_U607AAAAA00980.17 AA00
0337kud-m2_A_U606_U607AAAAA00980.18 AA00
0347kud-m3_A_U606_U607AAAAA00970.17 AA00
0357kud-m4_A_U606_U607AAAAA00970.18 AA00
0367kud-m5_A_U606_U607AAAAA00970.18 AA00
0377kud-m6_A_U606_U607AAAAA00970.18 AA00
0387kud-m7_A_U606_U607AAAAA00980.18 AA00
0397kud-m8_A_U606_U607AAAAA00970.17 AA00
0407kud-m9_A_U606_U607AAAAA00970.18 AA00
0417kud-m10_A_U607_C608AAAAA00950.21 AA00
0427kud-m1_A_U607_C608AAAAA00940.21 AA00
0437kud-m2_A_U607_C608AAAAA00940.20 AA00
0447kud-m3_A_U607_C608AAAAA00950.20 AA00
0457kud-m4_A_U607_C608AAAAA00950.21 AA00
0467kud-m5_A_U607_C608AAAAA00950.20 AA00
0477kud-m6_A_U607_C608AAAAA00940.20 AA00
0487kud-m7_A_U607_C608AAAAA00940.21 AA00
0497kud-m8_A_U607_C608AAAAA00950.20 AA00
0507kud-m9_A_U607_C608AAAAA00940.20 AA00
0517kud-m10_A_C608_G609OPNOP04580.34 OP04
0527kud-m1_A_C608_G609OPNOP04560.35 OP04
0537kud-m2_A_C608_G609OPNOP04570.33 OP04
0547kud-m3_A_C608_G609OPNOP04550.32 OP04
0557kud-m4_A_C608_G609OPNOP04590.33 OP04
0567kud-m5_A_C608_G609OPNOP04570.33 OP04
0577kud-m6_A_C608_G609OPNOP04540.34 OP04
0587kud-m7_A_C608_G609OPNOP04570.33 OP04
0597kud-m8_A_C608_G609OPNOP04600.33 OP04
0607kud-m9_A_C608_G609OPNOP04620.33 OP04
0617kud-m10_A_G609_G610AAAAA00940.20 AA00
0627kud-m1_A_G609_G610AAAAA00950.19 AA00
0637kud-m2_A_G609_G610AAAAA00950.20 AA00
0647kud-m3_A_G609_G610AAAAA00950.19 AA00
0657kud-m4_A_G609_G610AAAAA00950.19 AA00
0667kud-m5_A_G609_G610AAAAA00950.20 AA00
0677kud-m6_A_G609_G610AAAAA00920.22 AA00
0687kud-m7_A_G609_G610AAAAA00940.20 AA00
0697kud-m8_A_G609_G610AAAAA00940.19 AA00
0707kud-m9_A_G609_G610AAAAA00930.20 AA00
0717kud-m10_A_G610_G611AAAAA00950.22 AA00
0727kud-m1_A_G610_G611AAAAA00940.21 AA00
0737kud-m2_A_G610_G611AAAAA00950.20 AA00
0747kud-m3_A_G610_G611AAAAA00950.20 AA00
0757kud-m4_A_G610_G611AAAAA00940.22 AA00
0767kud-m5_A_G610_G611AAAAA00950.21 AA00
0777kud-m6_A_G610_G611AAAAA00960.21 AA00
0787kud-m7_A_G610_G611AAAAA00950.21 AA00
0797kud-m8_A_G610_G611AAAAA00960.20 AA00
0807kud-m9_A_G610_G611AAAAA00950.20 AA00
0817kud-m10_A_G611_A612NANNANT01.03 AA08
0827kud-m1_A_G611_A612NANNANT01.04 AA08
0837kud-m2_A_G611_A612NANNANT01.00 AA08
0847kud-m3_A_G611_A612NANNANT01.01 AA08
0857kud-m4_A_G611_A612NANNANT01.03 AA08
0867kud-m5_A_G611_A612NANNANT01.00 AA08
0877kud-m6_A_G611_A612NANNANT01.02 AA08
0887kud-m7_A_G611_A612NANNANT01.02 AA08
0897kud-m8_A_G611_A612NANNANT01.06 AA08
0907kud-m9_A_G611_A612NANNANT01.03 AA08
0917kud-m10_A_A612_A613AAAAA00930.16 AA00
0927kud-m1_A_A612_A613AAAAA00930.15 AA00
0937kud-m2_A_A612_A613AAAAA00940.16 AA00
0947kud-m3_A_A612_A613AAAAA00940.16 AA00
0957kud-m4_A_A612_A613AAAAA00940.15 AA00
0967kud-m5_A_A612_A613AAAAA00940.16 AA00
0977kud-m6_A_A612_A613AAAAA00940.16 AA00
0987kud-m7_A_A612_A613AAAAA00950.15 AA00
0997kud-m8_A_A612_A613AAAAA00930.17 AA00
1007kud-m9_A_A612_A613AAAAA00930.17 AA00
1017kud-m10_A_A613_C614AAAAA00980.12 AA00
1027kud-m1_A_A613_C614AAAAA00980.11 AA00
1037kud-m2_A_A613_C614AAAAA00980.12 AA00
1047kud-m3_A_A613_C614AAAAA00980.11 AA00
1057kud-m4_A_A613_C614AAAAA00980.11 AA00
1067kud-m5_A_A613_C614AAAAA00980.11 AA00
1077kud-m6_A_A613_C614AAAAA00980.12 AA00
1087kud-m7_A_A613_C614AAAAA00970.12 AA00
1097kud-m8_A_A613_C614AAAAA00990.10 AA00
1107kud-m9_A_A613_C614AAAAA00980.11 AA00
1117kud-m10_A_C614_C615AAAAA00970.17 AA00
1127kud-m1_A_C614_C615AAAAA00970.16 AA00
1137kud-m2_A_C614_C615AAAAA00980.16 AA00
1147kud-m3_A_C614_C615AAAAA00980.16 AA00
1157kud-m4_A_C614_C615AAAAA00970.16 AA00
1167kud-m5_A_C614_C615AAAAA00970.16 AA00
1177kud-m6_A_C614_C615AAAAA00970.17 AA00
1187kud-m7_A_C614_C615AAAAA00970.17 AA00
1197kud-m8_A_C614_C615AAAAA00960.16 AA00
1207kud-m9_A_C614_C615AAAAA00970.16 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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