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Conformers: ABBIImiBZICOPNSYNN
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Ax1 Domain of VEGF Readthrough Element

Results of the assignment of 150 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017kuc-m10_A_G582_G583AAAAA00980.10 AA00
0027kuc-m1_A_G582_G583AAAAA00980.09 AA00
0037kuc-m2_A_G582_G583AAAAA00980.10 AA00
0047kuc-m3_A_G582_G583AAAAA00970.11 AA00
0057kuc-m4_A_G582_G583AAAAA00970.10 AA00
0067kuc-m5_A_G582_G583AAAAA00970.11 AA00
0077kuc-m6_A_G582_G583AAAAA00970.10 AA00
0087kuc-m7_A_G582_G583AAAAA00970.11 AA00
0097kuc-m8_A_G582_G583AAAAA00970.11 AA00
0107kuc-m9_A_G582_G583AAAAA00980.11 AA00
0117kuc-m10_A_G583_A584AAAAA00980.10 AA00
0127kuc-m1_A_G583_A584AAAAA00980.10 AA00
0137kuc-m2_A_G583_A584AAAAA00980.10 AA00
0147kuc-m3_A_G583_A584AAAAA00980.10 AA00
0157kuc-m4_A_G583_A584AAAAA00980.09 AA00
0167kuc-m5_A_G583_A584AAAAA00980.09 AA00
0177kuc-m6_A_G583_A584AAAAA00970.10 AA00
0187kuc-m7_A_G583_A584AAAAA00980.09 AA00
0197kuc-m8_A_G583_A584AAAAA00980.10 AA00
0207kuc-m9_A_G583_A584AAAAA00980.10 AA00
0217kuc-m10_A_A584_G585AAAAA00960.09 AA00
0227kuc-m1_A_A584_G585AAAAA00960.10 AA00
0237kuc-m2_A_A584_G585AAAAA00970.09 AA00
0247kuc-m3_A_A584_G585AAAAA00970.09 AA00
0257kuc-m4_A_A584_G585AAAAA00960.09 AA00
0267kuc-m5_A_A584_G585AAAAA00970.09 AA00
0277kuc-m6_A_A584_G585AAAAA00960.08 AA00
0287kuc-m7_A_A584_G585AAAAA00960.09 AA00
0297kuc-m8_A_A584_G585AAAAA00960.09 AA00
0307kuc-m9_A_A584_G585AAAAA00960.10 AA00
0317kuc-m10_A_G585_G586AAAAA00840.18 AA00
0327kuc-m1_A_G585_G586AAAAA00850.17 AA00
0337kuc-m2_A_G585_G586AAAAA00850.17 AA00
0347kuc-m3_A_G585_G586AAAAA00850.18 AA00
0357kuc-m4_A_G585_G586AAAAA00860.17 AA00
0367kuc-m5_A_G585_G586AAAAA00850.18 AA00
0377kuc-m6_A_G585_G586AAAAA00860.16 AA00
0387kuc-m7_A_G585_G586AAAAA00860.16 AA00
0397kuc-m8_A_G585_G586AAAAA00850.17 AA00
0407kuc-m9_A_G585_G586AAAAA00850.17 AA00
0417kuc-m10_A_G586_A587AAAAA08770.35 AA08
0427kuc-m1_A_G586_A587AAAAA08790.35 AA08
0437kuc-m2_A_G586_A587AAAAA08790.34 AA08
0447kuc-m3_A_G586_A587AAAAA08810.32 AA08
0457kuc-m4_A_G586_A587AAAAA08790.32 AA08
0467kuc-m5_A_G586_A587AAAAA08800.34 AA08
0477kuc-m6_A_G586_A587AAAAA00760.26 AA00
0487kuc-m7_A_G586_A587AAAAA08800.35 AA08
0497kuc-m8_A_G586_A587AAAAA08800.34 AA08
0507kuc-m9_A_G586_A587AAAAA08790.34 AA08
0517kuc-m10_A_A587_A588AAAAA00530.31 AA00
0527kuc-m1_A_A587_A588AAAAA00710.27 AA00
0537kuc-m2_A_A587_A588AAAAA00720.28 AA00
0547kuc-m3_A_A587_A588AAAAA00740.26 AA00
0557kuc-m4_A_A587_A588AAAAA00610.31 AA00
0567kuc-m5_A_A587_A588AAAAA00600.30 AA00
0577kuc-m6_A_A587_A588AAAAA00780.28 AA00
0587kuc-m7_A_A587_A588AAAAA00610.31 AA00
0597kuc-m8_A_A587_A588AAAAA00540.30 AA00
0607kuc-m9_A_A587_A588AAAAA00750.28 AA00
0617kuc-m10_A_A588_G589NANNANT02.23 ZZ2S
0627kuc-m1_A_A588_G589NANNANT02.23 ZZ2S
0637kuc-m2_A_A588_G589NANNANT02.23 ZZ2S
0647kuc-m3_A_A588_G589NANNANT02.24 ZZ2S
0657kuc-m4_A_A588_G589NANNANT02.23 ZZ2S
0667kuc-m5_A_A588_G589NANNANT02.23 ZZ2S
0677kuc-m6_A_A588_G589NANNANT02.26 ZZ2S
0687kuc-m7_A_A588_G589NANNANT02.24 ZZ2S
0697kuc-m8_A_A588_G589NANNANT02.23 ZZ2S
0707kuc-m9_A_A588_G589NANNANT02.23 ZZ2S
0717kuc-m10_A_G589_G590NANNANT01.26 OP14
0727kuc-m1_A_G589_G590NANNANT01.24 OP14
0737kuc-m2_A_G589_G590NANNANT01.23 OP14
0747kuc-m3_A_G589_G590NANNANT01.30 OP14
0757kuc-m4_A_G589_G590NANNANT02.33 OPS1
0767kuc-m5_A_G589_G590NANNANT01.26 OP14
0777kuc-m6_A_G589_G590NANNANT02.26 OPS1
0787kuc-m7_A_G589_G590NANNANT01.30 OP14
0797kuc-m8_A_G589_G590NANNANT01.23 OP14
0807kuc-m9_A_G589_G590NANNANT01.24 OP14
0817kuc-m10_A_G590_A591SYNAAS1380.39 AAS1
0827kuc-m1_A_G590_A591SYNAAS1410.36 AAS1
0837kuc-m2_A_G590_A591SYNAAS1390.37 AAS1
0847kuc-m3_A_G590_A591NANNANT00.45 AAS1
0857kuc-m4_A_G590_A591SYNAAS1240.43 AAS1
0867kuc-m5_A_G590_A591SYNAAS1380.38 AAS1
0877kuc-m6_A_G590_A591SYNAAS1240.43 AAS1
0887kuc-m7_A_G590_A591SYNAAS1260.43 AAS1
0897kuc-m8_A_G590_A591SYNAAS1400.36 AAS1
0907kuc-m9_A_G590_A591SYNAAS1410.37 AAS1
0917kuc-m10_A_A591_G592AAAAA00290.31 AA00
0927kuc-m1_A_A591_G592AAAAA08510.36 AA08
0937kuc-m2_A_A591_G592AAAAA00120.34 AA00
0947kuc-m3_A_A591_G592AAAAA08500.38 AA08
0957kuc-m4_A_A591_G592AAAAA00150.37 AA00
0967kuc-m5_A_A591_G592AAAAA00260.31 AA00
0977kuc-m6_A_A591_G592AAAAA08410.46 AA08
0987kuc-m7_A_A591_G592AAAAA08550.37 AA08
0997kuc-m8_A_A591_G592AAAAA00200.36 AA00
1007kuc-m9_A_A591_G592AAAAA08500.36 AA08
1017kuc-m10_A_G592_C593AAAAA00890.26 AA00
1027kuc-m1_A_G592_C593AAAAA00880.27 AA00
1037kuc-m2_A_G592_C593AAAAA00880.27 AA00
1047kuc-m3_A_G592_C593AAAAA00880.26 AA00
1057kuc-m4_A_G592_C593AAAAA00840.29 AA00
1067kuc-m5_A_G592_C593AAAAA00910.26 AA00
1077kuc-m6_A_G592_C593AAAAA00910.23 AA00
1087kuc-m7_A_G592_C593AAAAA00870.27 AA00
1097kuc-m8_A_G592_C593AAAAA00830.29 AA00
1107kuc-m9_A_G592_C593AAAAA00880.26 AA00
1117kuc-m10_A_C593_C594AAAAA00960.12 AA00
1127kuc-m1_A_C593_C594AAAAA00970.12 AA00
1137kuc-m2_A_C593_C594AAAAA00970.11 AA00
1147kuc-m3_A_C593_C594AAAAA00970.11 AA00
1157kuc-m4_A_C593_C594AAAAA00970.11 AA00
1167kuc-m5_A_C593_C594AAAAA00970.11 AA00
1177kuc-m6_A_C593_C594AAAAA00960.12 AA00
1187kuc-m7_A_C593_C594AAAAA00970.12 AA00
1197kuc-m8_A_C593_C594AAAAA00970.12 AA00
1207kuc-m9_A_C593_C594AAAAA00970.11 AA00
1217kuc-m10_A_C594_U595AAAAA00970.11 AA00
1227kuc-m1_A_C594_U595AAAAA00970.10 AA00
1237kuc-m2_A_C594_U595AAAAA00970.12 AA00
1247kuc-m3_A_C594_U595AAAAA00970.11 AA00
1257kuc-m4_A_C594_U595AAAAA00960.12 AA00
1267kuc-m5_A_C594_U595AAAAA00970.11 AA00
1277kuc-m6_A_C594_U595AAAAA00980.10 AA00
1287kuc-m7_A_C594_U595AAAAA00970.11 AA00
1297kuc-m8_A_C594_U595AAAAA00970.11 AA00
1307kuc-m9_A_C594_U595AAAAA00970.11 AA00
1317kuc-m10_A_U595_C596AAAAA00990.08 AA00
1327kuc-m1_A_U595_C596AAAAA00980.10 AA00
1337kuc-m2_A_U595_C596AAAAA00990.09 AA00
1347kuc-m3_A_U595_C596AAAAA00980.09 AA00
1357kuc-m4_A_U595_C596AAAAA00980.09 AA00
1367kuc-m5_A_U595_C596AAAAA00990.08 AA00
1377kuc-m6_A_U595_C596AAAAA00990.09 AA00
1387kuc-m7_A_U595_C596AAAAA00990.09 AA00
1397kuc-m8_A_U595_C596AAAAA00980.09 AA00
1407kuc-m9_A_U595_C596AAAAA00980.09 AA00
1417kuc-m10_A_C596_C597AAAAA00950.13 AA00
1427kuc-m1_A_C596_C597AAAAA00960.12 AA00
1437kuc-m2_A_C596_C597AAAAA00960.13 AA00
1447kuc-m3_A_C596_C597AAAAA00970.12 AA00
1457kuc-m4_A_C596_C597AAAAA00960.14 AA00
1467kuc-m5_A_C596_C597AAAAA00950.14 AA00
1477kuc-m6_A_C596_C597AAAAA00960.14 AA00
1487kuc-m7_A_C596_C597AAAAA00970.12 AA00
1497kuc-m8_A_C596_C597AAAAA00970.13 AA00
1507kuc-m9_A_C596_C597AAAAA00970.13 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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