Conformers:
ABBIImiBZICOPNSYNN
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DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (2160min)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7kth_T_DC1_DG2 | A-B | AB01 | 56 | 0.24 |
| 02 | 7kth_T_DG2_DG3 | B-A | BA05 | 78 | 0.19 |
| 03 | 7kth_T_DG3_DC4 | BBB | BB01 | 65 | 0.27 |
| 04 | 7kth_T_DC4_DC5 | NAN | NANT | 0 | 1.13 |
| 05 | 7kth_T_DC5_DT6 | BBB | BB00 | 60 | 0.28 |
| 06 | 7kth_T_DT6_DA7 | B-A | BA10 | 59 | 0.45 |
| 07 | 7kth_T_DA7_DC8 | A-B | AB05 | 92 | 0.17 |
| 08 | 7kth_T_DC8_DG9 | BBB | BB00 | 29 | 0.42 |
| 09 | 7kth_P_DC1_DG2 | AAA | AA00 | 89 | 0.19 |
| 10 | 7kth_P_DG2_DT3 | AAA | AA00 | 87 | 0.18 |
| 11 | 7kth_P_DT3_DA4 | AAA | AA00 | 74 | 0.20 |
| 12 | 7kth_P_DA4_8OG5 | AAA | AA09 | 83 | 0.18 |
| 13 | 7kth_D_DG1_DC2 | B-A | BA05 | 12 | 0.37 |
| 14 | 7kth_D_DC2_DC.A3 | AAA | AA02 | 11 | 0.51 |
| 15 | 7kth_D_DC2_DC.B3 | A-B | AB01 | 12 | 0.33 |
| 16 | 7kth_D_DC.A3_DG.A4 | A-B | AB02 | 75 | 0.36 |
| 17 | 7kth_D_DC.B3_DG.B4 | BBB | BB00 | 80 | 0.20 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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