Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human DNA Ligase 1(E346A/E592A) Bound to a bulged DNA substrate
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7kr3_B_DA3_DA4 | B12 | BB05 | 78 | 0.24 |
| 02 | 7kr3_B_DA4_DT5 | BBw | BB16 | 20 | 0.56 |
| 03 | 7kr3_B_DT5_DG6 | BBB | BB00 | 20 | 0.25 |
| 04 | 7kr3_B_DG6_DT7 | BBB | BB00 | 66 | 0.24 |
| 05 | 7kr3_B_DT7_DC8 | BBB | BB00 | 43 | 0.26 |
| 06 | 7kr3_B_DC8_DT9 | A-B | AB03 | 30 | 0.39 |
| 07 | 7kr3_B_DT9_DG10 | A-B | AB03 | 81 | 0.16 |
| 08 | 7kr3_B_DG10_DC11 | NAN | NANT | 0 | 1.23 |
| 09 | 7kr3_B_DC11_DC12 | NAN | NANT | 0 | 1.54 |
| 10 | 7kr3_B_DC12_DC13 | B-A | BA10 | 36 | 0.60 |
| 11 | 7kr3_C_DA1_DT2 | A-B | AB04 | 47 | 0.26 |
| 12 | 7kr3_C_DT2_DT3 | B-A | BA05 | 78 | 0.21 |
| 13 | 7kr3_C_DT3_DC4 | BBB | BB01 | 37 | 0.32 |
| 14 | 7kr3_C_DC4_DT5 | BBB | BB00 | 30 | 0.29 |
| 15 | 7kr3_C_DT5_DG6 | B12 | BB04 | 81 | 0.25 |
| 16 | 7kr3_C_DG6_DC7 | B-A | BA05 | 78 | 0.22 |
| 17 | 7kr3_D_DG9_DC10 | B12 | BB04 | 37 | 0.18 |
| 18 | 7kr3_D_DC10_DA11 | NAN | NANT | 0 | 0.38 |
| 19 | 7kr3_D_DA11_DG12 | BBB | BB00 | 23 | 0.31 |
| 20 | 7kr3_D_DG12_DA13 | BBB | BB00 | 42 | 0.20 |
| 21 | 7kr3_D_DA13_DA14 | B-A | BA16 | 78 | 0.18 |
| 22 | 7kr3_D_DA14_DT15 | AAA | AA08 | 77 | 0.25 |
| 23 | 7kr3_D_DT15_DG16 | AAu | AA12 | 62 | 0.28 |
| 24 | 7kr3_D_DG16_DG17 | A-B | AB05 | 69 | 0.31 |
| 25 | 7kr3_D_DG17_DG18 | BBB | BB00 | 82 | 0.25 |
| 26 | 7kr3_D_DG18_DC19 | B-A | BA08 | 87 | 0.21 |
| 27 | 7kr3_D_DC19_DA20 | A-B | AB01 | 43 | 0.21 |
| 28 | 7kr3_D_DA20_DG21 | BBw | BB02 | 75 | 0.28 |
| 29 | 7kr3_D_DG21_DA22 | BBB | BB00 | 55 | 0.30 |
| 30 | 7kr3_D_DA22_DC23 | BBB | BB00 | 37 | 0.26 |
| 31 | 7kr3_D_DC23_DA24 | BBB | BB00 | 51 | 0.35 |
| 32 | 7kr3_D_DA24_DT25 | BBB | BB01 | 69 | 0.18 |
| 33 | 7kr3_D_DT25_DT26 | B-A | BA05 | 54 | 0.18 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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