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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Bacillus halodurans OapB in complex with its OLE RNA target (native, crystal form I)

Results of the assignment of 59 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017kkv_B_GTP484_G485AAAAA00690.15 AA00
027kkv_B_G485_C486AAAAA08840.15 AA08
037kkv_B_C486_C487AAAAA00900.15 AA00
047kkv_B_C487_A488AAAAA00910.17 AA00
057kkv_B_A488_G489AAwAA01900.14 AA01
067kkv_B_G489_U490AAAAA00750.21 AA00
077kkv_B_U490_C491A-BAB05730.31 AB05
087kkv_B_C491_U492NANNANT01.35 OP13
097kkv_B_U492_G493AAAAA00690.17 AA00
107kkv_B_G493_G494AAAAA00880.14 AA00
117kkv_B_G494_C495AAAAA00910.10 AA00
127kkv_B_C495_G496AAAAA00910.16 AA00
137kkv_B_G496_U497AAAAA08900.09 AA08
147kkv_B_U497_U498NANNANT01.41 OP29
157kkv_B_U498_U499OPNOP11800.27 OP11
167kkv_B_U499_G500AAAAA00440.28 AA00
177kkv_B_G500_G501AAAAA00900.17 AA00
187kkv_B_G501_U502OPNOP03880.30 OP03
197kkv_B_U502_G503AAAAA08430.44 AA08
207kkv_B_G503_A504AAAAA09730.29 AA09
217kkv_B_A504_C505AAwAA05330.44 AA05
227kkv_B_C505_A506AAAAA08830.27 AA08
237kkv_B_A506_G507AAAAA00830.20 AA00
247kkv_B_G507_C508AAAAA00900.18 AA00
257kkv_B_C508_G509AAAAA00660.22 AA00
267kkv_B_G509_C510AAAAA00890.10 AA00
277kkv_B_C510_C511AAAAA00790.15 AA00
287kkv_B_C511_A512AAwAA01940.11 AA01
297kkv_B_A512_A513AAAAA00590.24 AA00
307kkv_B_A513_G514AAAAA00830.16 AA00
317kkv_B_G514_U515AAAAA00900.16 AA00
327kkv_B_U515_U516AAAAA00840.11 AA00
337kkv_B_U516_C517AAAAA00860.13 AA00
347kkv_B_C517_U518AAAAA00850.22 AA00
357kkv_B_U518_U519OPNOP09790.19 OP09
367kkv_B_U519_C520OPNOP20670.44 OP20
377kkv_B_C520_G521ZZZZZ1S270.33 ZZ1S
387kkv_B_G521_G522NANNANT00.49 AA05
397kkv_B_G522_A523AAAAA00660.15 AA00
407kkv_B_A523_A524AAAAA00790.08 AA00
417kkv_B_A524_U525AAAAA00760.24 AA00
427kkv_B_U525_U526A-BAB05830.27 AB05
437kkv_B_U526_G527NANNANT01.03 OP13
447kkv_B_G527_G528AAAAA00510.27 AA00
457kkv_B_G528_G529AAwAA01640.32 AA01
467kkv_B_G529_A530OPNOP03300.39 OP03
477kkv_B_A530_A531AAAAA08730.34 AA08
487kkv_B_A531_A532AAAAA00810.20 AA00
497kkv_B_A532_U533NANNANT01.64 OP28
507kkv_B_U533_C534OPNOP11460.58 OP11
517kkv_B_C534_C535AAAAA00940.12 AA00
527kkv_B_C535_U536AAuAA12870.18 AA12
537kkv_B_U536_A537AAAAA00770.29 AA00
547kkv_B_A537_C538AAAAA00850.17 AA00
557kkv_B_C538_U539AAAAA00780.23 AA00
567kkv_B_U539_G540AAAAA00820.16 AA00
577kkv_B_G540_G541AAAAA00890.13 AA00
587kkv_B_G541_C542AAAAA00890.14 AA00
597kkv_B_C542_C543AAAAA00910.20 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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