DNATCO v4.1: results

Crystal structure of a mosquito-borne flavivirus dumbbell RNA

Results of the assignment of 177 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7kga_A_G1_G2	AAA	AA00	74	0.19	AA00
002	7kga_A_G2_G3	AAA	AA00	82	0.12	AA00
003	7kga_A_G3_G4	AAA	AA00	90	0.14	AA00
004	7kga_A_G4_G5	AAA	AA00	93	0.17	AA00
005	7kga_A_G5_C6	NAN	NANT	0	0.39	OP30
006	7kga_A_C6_C7	AAA	AA00	90	0.18	AA00
007	7kga_A_C7_A8	AAA	AA00	92	0.10	AA00
008	7kga_A_A8_G9	AAA	AA00	91	0.16	AA00
009	7kga_A_G9_A10	AAA	AA00	91	0.08	AA00
010	7kga_A_A10_U11	AAA	AA00	74	0.29	AA00
011	7kga_A_U11_G12	AAA	AA00	78	0.13	AA00
012	7kga_A_G12_U13	AAA	AA00	88	0.16	AA00
013	7kga_A_U13_C14	AAA	AA00	99	0.11	AA00
014	7kga_A_C14_A15	AAA	AA00	93	0.13	AA00
015	7kga_A_A15_U16	AAA	AA08	6	0.46	AA08
016	7kga_A_U16_G17	AAA	AA00	78	0.14	AA00
017	7kga_A_G17_U18	AAA	AA00	93	0.10	AA00
018	7kga_A_U18_C19	AAA	AA00	77	0.12	AA00
019	7kga_A_C19_U20	AAA	AA00	96	0.11	AA00
020	7kga_A_U20_C21	AAA	AA00	89	0.16	AA00
021	7kga_A_C21_U22	AAA	AA00	95	0.18	AA00
022	7kga_A_U22_C23	AAA	AA08	87	0.21	AA08
023	7kga_A_C23_A24	NAN	NANT	0	0.44	ZZ01
024	7kga_A_A24_A25	NAN	NANT	0	1.92	ZZS2
025	7kga_A_A25_G26	NAN	NANT	0	0.77	AA07
026	7kga_A_G26_C27	AAA	AA00	89	0.08	AA00
027	7kga_A_C27_C28	AAA	AA00	90	0.11	AA00
028	7kga_A_C28_U29	AAA	AA00	93	0.12	AA00
029	7kga_A_U29_A30	AAA	AA00	75	0.25	AA00
030	7kga_A_A30_G31	AAA	AA00	65	0.30	AA00
031	7kga_A_G31_G32	AAA	AA00	74	0.22	AA00
032	7kga_A_G32_A33	AAA	AA00	88	0.11	AA00
033	7kga_A_A33_G34	AAA	AA00	89	0.13	AA00
034	7kga_A_G34_A35	AAA	AA00	90	0.16	AA00
035	7kga_A_A35_C36	AAA	AA00	83	0.20	AA00
036	7kga_A_C36_A37	AAA	AA00	95	0.08	AA00
037	7kga_A_A37_C38	AAA	AA00	82	0.17	AA00
038	7kga_A_C38_U39	A-B	AB05	83	0.26	AB05
039	7kga_A_U39_A40	NAN	NANT	0	1.75	BB11
040	7kga_A_A40_G41	NAN	NANT	0	1.21	OP27
041	7kga_A_G41_A42	AAA	AA00	84	0.14	AA00
042	7kga_A_A42_C43	AAA	AA00	91	0.14	AA00
043	7kga_A_C43_A44	AAA	AA00	89	0.14	AA00
044	7kga_A_A44_C45	NAN	NANT	0	1.39	OP17
045	7kga_A_C45_U46	NAN	NANT	0	1.44	OP31
046	7kga_A_U46_C47	AAw	AA01	45	0.31	AA01
047	7kga_A_C47_U48	AAw	AA01	50	0.38	AA01
048	7kga_A_U48_G49	AAA	AA00	74	0.20	AA00
049	7kga_A_G49_G50	AAA	AA00	81	0.18	AA00
050	7kga_A_G50_A51	AAA	AA00	75	0.17	AA00
051	7kga_A_A51_C52	AAA	AA00	84	0.22	AA00
052	7kga_A_C52_U53	AAA	AA00	92	0.18	AA00
053	7kga_A_U53_A54	AAA	AA00	83	0.25	AA00
054	7kga_A_A54_U55	NAN	NANT	0	1.13	OP28
055	7kga_A_U55_C56	NAN	NANT	0	0.69	OP14
056	7kga_A_C56_G57	NAN	NANT	0	1.56	OP25
057	7kga_A_G57_G58	AAw	AA01	71	0.24	AA01
058	7kga_A_G58_U59	AAA	AA08	62	0.24	AA08
059	7kga_A_U59_U60	OPN	OP09	28	0.55	OP09
060	7kga_A_U60_A61	OPN	OP11	70	0.65	OP11
061	7kga_A_A61_G62	A-B	AB05	66	0.32	AB05
062	7kga_A_G62_A63	OPN	OP26	72	0.30	OP26
063	7kga_A_A63_G64	AAA	AA08	39	0.54	AA08
064	7kga_A_G64_G65	AAA	AA00	74	0.27	AA00
065	7kga_A_G65_A66	OPN	OP01	70	0.41	OP01
066	7kga_A_A66_A67	AAA	AA00	26	0.44	AA00
067	7kga_A_A67_A68	AAA	AA00	95	0.10	AA00
068	7kga_A_A68_C69	AAA	AA00	85	0.12	AA00
069	7kga_A_C69_C70	AAA	AA00	96	0.15	AA00
070	7kga_A_C70_C71	AAA	AA00	88	0.23	AA00
071	7kga_A_C71_C72	AAA	AA00	90	0.09	AA00
072	7kga_A_C72_C73	AAA	AA00	90	0.10	AA00
073	7kga_A_C73_C74	AAA	AA00	91	0.11	AA00
074	7kga_A_C74_C75	AAA	AA00	66	0.26	AA00
075	7kga_A_C75_A76	NAN	NANT	0	0.91	IC02
076	7kga_A_A76_A77	NAN	NANT	0	0.88	OP19
077	7kga_A_A77_A78	OPN	OP11	33	0.62	OP11
078	7kga_A_A78_A79	AAA	AA00	46	0.26	AA00
079	7kga_A_A79_A80	NAN	NANT	0	0.42	ZZ01
080	7kga_A_A80_U81	NAN	NANT	0	1.51	OP14
081	7kga_A_U81_G82	NAN	NANT	0	1.29	OP06
082	7kga_A_G82_U83	AAA	AA00	87	0.22	AA00
083	7kga_A_U83_A84	AAw	AA05	75	0.26	AA05
084	7kga_A_A84_U85	AAA	AA08	88	0.18	AA08
085	7kga_A_U85_A86	NAN	NANT	0	0.91	AA11
086	7kga_A_A86_G87	AAA	AA08	66	0.27	AA08
087	7kga_A_G87_G88	AAA	AA00	89	0.13	AA00
088	7kga_A_G88_C89	AAA	AA00	92	0.15	AA00
089	7kga_B_G1_G2	AAA	AA00	81	0.13	AA00
090	7kga_B_G2_G3	AAA	AA00	73	0.20	AA00
091	7kga_B_G3_G4	AAA	AA00	88	0.20	AA00
092	7kga_B_G4_G5	AAA	AA00	62	0.17	AA00
093	7kga_B_G5_C6	NAN	NANT	0	0.44	OP30
094	7kga_B_C6_C7	AAA	AA00	86	0.14	AA00
095	7kga_B_C7_A8	AAA	AA00	85	0.20	AA00
096	7kga_B_A8_G9	AAA	AA00	88	0.15	AA00
097	7kga_B_G9_A10	AAA	AA00	86	0.17	AA00
098	7kga_B_A10_U11	AAA	AA00	89	0.14	AA00
099	7kga_B_U11_G12	AAA	AA00	82	0.16	AA00
100	7kga_B_G12_U13	AAA	AA00	86	0.15	AA00
101	7kga_B_U13_C14	AAA	AA00	94	0.23	AA00
102	7kga_B_C14_A15	AAA	AA08	76	0.27	AA08
103	7kga_B_A15_U16	AAA	AA08	78	0.25	AA08
104	7kga_B_U16_G17	AAA	AA00	94	0.10	AA00
105	7kga_B_G17_U18	AAA	AA00	84	0.15	AA00
106	7kga_B_U18_C19	AAA	AA00	90	0.15	AA00
107	7kga_B_C19_U20	AAA	AA00	97	0.11	AA00
108	7kga_B_U20_C21	AAA	AA00	87	0.10	AA00
109	7kga_B_C21_U22	AAA	AA00	83	0.26	AA00
110	7kga_B_U22_C23	NAN	NANT	0	0.81	OP02
111	7kga_B_C23_A24	NAN	NANT	0	0.90	BB2S
112	7kga_B_A24_A25	NAN	NANT	0	1.06	ZZS2
113	7kga_B_A25_G26	NAN	NANT	0	0.79	OP26
114	7kga_B_G26_C27	AAA	AA00	90	0.15	AA00
115	7kga_B_C27_C28	AAA	AA00	76	0.23	AA00
116	7kga_B_C28_U29	AAA	AA00	83	0.13	AA00
117	7kga_B_U29_A30	AAA	AA00	79	0.18	AA00
118	7kga_B_A30_G31	AAA	AA00	81	0.22	AA00
119	7kga_B_G31_G32	AAA	AA00	82	0.18	AA00
120	7kga_B_G32_A33	AAA	AA08	88	0.14	AA08
121	7kga_B_A33_G34	AAA	AA00	87	0.13	AA00
122	7kga_B_G34_A35	AAA	AA00	94	0.13	AA00
123	7kga_B_A35_C36	AAA	AA00	95	0.11	AA00
124	7kga_B_C36_A37	AAA	AA00	87	0.14	AA00
125	7kga_B_A37_C38	AAu	AA12	87	0.35	AA12
126	7kga_B_C38_U39	A-B	AB05	87	0.34	AB05
127	7kga_B_U39_A40	NAN	NANT	0	0.71	ZZ02
128	7kga_B_A40_G41	NAN	NANT	0	1.74	OP19
129	7kga_B_G41_A42	AAA	AA00	75	0.17	AA00
130	7kga_B_A42_C43	AAw	AA01	86	0.16	AA01
131	7kga_B_C43_A44	A-B	AB05	87	0.20	AB05
132	7kga_B_A44_C45	NAN	NANT	0	1.13	OP20
133	7kga_B_C45_U46	NAN	NANT	0	1.16	OP31
134	7kga_B_U46_C47	AAA	AA00	86	0.15	AA00
135	7kga_B_C47_U48	AAA	AA00	89	0.17	AA00
136	7kga_B_U48_G49	AAw	AA01	79	0.19	AA01
137	7kga_B_G49_G50	AAA	AA08	83	0.24	AA08
138	7kga_B_G50_A51	AAA	AA00	72	0.18	AA00
139	7kga_B_A51_C52	AAA	AA00	87	0.20	AA00
140	7kga_B_C52_U53	AAA	AA08	83	0.20	AA08
141	7kga_B_U53_A54	AAA	AA00	86	0.20	AA00
142	7kga_B_A54_U55	NAN	NANT	0	0.98	OP06
143	7kga_B_U55_C56	NAN	NANT	0	0.78	OP04
144	7kga_B_C56_G57	NAN	NANT	0	1.83	OP25
145	7kga_B_G57_G58	AAA	AA00	67	0.21	AA00
146	7kga_B_G58_U59	AAA	AA00	90	0.15	AA00
147	7kga_B_U59_U60	A-B	AB05	95	0.18	AB05
148	7kga_B_U60_A61	NAN	NANT	0	1.49	BB2S
149	7kga_B_A61_G62	NAN	NANT	0	1.08	OPS1
150	7kga_B_G62_A63	OPN	OP26	63	0.31	OP26
151	7kga_B_A63_G64	AAA	AA08	31	0.52	AA08
152	7kga_B_G64_G65	AAA	AA00	76	0.25	AA00
153	7kga_B_G65_A66	OPN	OP01	67	0.43	OP01
154	7kga_B_A66_A67	AAA	AA00	73	0.27	AA00
155	7kga_B_A67_A68	AAA	AA00	85	0.23	AA00
156	7kga_B_A68_C69	AAA	AA00	74	0.14	AA00
157	7kga_B_C69_C70	AAA	AA00	82	0.15	AA00
158	7kga_B_C70_C71	AAA	AA00	96	0.18	AA00
159	7kga_B_C71_C72	AAw	AA11	81	0.20	AA11
160	7kga_B_C72_C73	AAA	AA00	61	0.23	AA00
161	7kga_B_C73_C74	AAA	AA00	89	0.10	AA00
162	7kga_B_C74_C75	AAA	AA00	90	0.15	AA00
163	7kga_B_C75_A76	AAA	AA00	87	0.19	AA00
164	7kga_B_A76_A77	ZZZ	ZZ01	76	0.18	ZZ01
165	7kga_B_A77_A78	NAN	NANT	0	1.27	OP19
166	7kga_B_A78_A79	NAN	NANT	0	0.63	OP16
167	7kga_B_A79_A80	AAA	AA08	80	0.22	AA08
168	7kga_B_A80_U81	AAA	AA00	52	0.30	AA00
169	7kga_B_U81_G82	SYN	AB2S	48	0.36	AB2S
170	7kga_B_G82_U83	NAN	NANT	0	0.83	OPS1
171	7kga_B_U83_A84	OPN	OP21	50	0.29	OP21
172	7kga_B_A84_U85	NAN	NANT	0	0.75	OP13
173	7kga_B_U85_A86	AAA	AA00	83	0.16	AA00
174	7kga_B_A86_G87	AAA	AA00	88	0.14	AA00
175	7kga_B_G87_G88	AAw	AA01	55	0.25	AA01
176	7kga_B_G88_C89	AAA	AA00	42	0.29	AA00
177	7kga_B_C89_U90	NAN	NANT	0	1.00	OP31

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

Z

N

Results of the assignment of 177 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible